FC875266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25 Identity = 49/94 (52.13%), Postives = 70/94 (74.47%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETT---PQPSELGSS 666 LD +I++FPTF+YS+VK ++G G +ECAVC+ EFED ETLRL+P+C HVFH +C+ WL H+TCP+CR +L +PGE + P+P + S+ Sbjct: 68 LDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGERSYLNPEPDLVEST 161
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.589e-22 Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 615 LD E I +FP+FVY++ + ++ G G LEC VCLNEF+DDETLRL+P C HVFH +C+D WL +TCP+CR+ + Sbjct: 57 LDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKV 130
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.678e-21 Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPS 651 L+ +I++FPTF YS VK L+ K LECA+CL EF+ D LRL+ C HVFH ECID W ESH TCPVCR +L P +P+ Sbjct: 82 LELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPT 167
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 621 +D+ +IDT P F Y + LK+ +C VCL EFE ++ LRL+PKC H FH ECID WL SH+TCP+CRSNL S Sbjct: 100 VDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 624 +D+ IDT P F Y + LK +CAVCL EFE ++ LRL+PKC H FH +CID WL SH+TCP+CRS+L S+ Sbjct: 108 VDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSD 182
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18 Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 624 LD++ I++ P F +S +K LK G LEC+VCL++FED E LRL+PKC H FH CID WLE H TCP+CR+ + E Sbjct: 99 LDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIE 172
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 615 L+ +I ++P F +S VK L+ K LECA+CL EFE++ L RL+ C HVFH ECID WLES+ TCPVCR NL Sbjct: 86 LEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNL 160
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18 Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 1 Query: 286 MGFFSIYIRHCSDSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTF--------------VYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN-LASEPGETTPQPSELGSSE 669 MGFFS+Y RH +DSS+S + L V+ + P VY K K + +C +CL++FE+ ET+++IP C HVFH +C+D WL S+ TCP+CRSN L S+ +P + S+E Sbjct: 64 MGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQDSAE 204
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.126e-17 Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 630 LD VI + P F +SD + K +ECAVCL+EFE+ ET R++P C H FH +CID W SH+TCP+CRS + S G Sbjct: 95 LDPNVIKSLPVFTFSD----ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAG 169
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 624 +DR VI++ P F + L K LECAVCL FE E LRL+PKC H FH EC+D WL++H+TCP+CR + E Sbjct: 121 IDRSVIESLPVFRFG---ALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194 The following BLAST results are available for this feature:
BLAST of FC875266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875266 ID=FC875266; Name=FC875266; organism=Citrus clementina; type=EST; length=673bpback to top |