FC875266

Overview
NameFC875266
Unique NameFC875266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875266_ssr29 microsatellite FC875266_ssr29:29..44. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875266_ssr130 microsatellite FC875266_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10192 contig Ccv1_Contig10192:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 621
            LD+ +ID  P F+Y ++K  K      +CAVCL EF +D+ LRL+P C H FH +CID WL S++TCP+CR  L S
Sbjct:  119 LDQALIDALPVFLYKEIKGTKE---PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.296e-17
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 624
            LD+  I++ P F +S +K  K G   L+C+VCL++FE  E LRL+PKC H FH  CID WLE H TCP+CR  ++ E
Sbjct:   98 LDKTAIESLPLFRFSALKGSKQG---LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSME 171          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  454 KVGKGALE---CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---------SEPGETTP 642
            K G G +E   C VCLNEFE+DE+LRL+PKC+H FH  CID WL SHT CP+CR+ +A         S P E TP
Sbjct:  166 KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTP 240          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSEL 657
            LD ++I++FP + YS VK      G  +C++CL EF DD+T+RLI  C+H FH  CID W E H TCPVCR  L  E   +  +P E+
Sbjct:  131 LDSKIIESFPEYPYS-VKD----HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEV 213          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 621
            LD+  ID  P F+Y +V T+ + +   +CAVCLNEF D + LRL+P C H FH  CID WL S++TCP+CR +L++
Sbjct:  181 LDQTAIDALPVFLYGNV-TISLEQ-PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLST 254          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  454 KVGKGAL---ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN--LASEP----GETTPQPSELGSSEV 672
            K G+G +   EC+VCLNEFE+DE+LRL+PKC H FH  CID WL SH  CP+CR+   L +EP     ET  QP    S+++
Sbjct:  124 KKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDL 205          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALE-CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 648
            LD  V++  P FVYS    +K  +  LE C+VCL+EFE+D+  R++PKC HVFH +CID W  S ++CP+CR+ +      T P+P
Sbjct:   88 LDPTVLEKIPIFVYS----VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEP 169          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGK-------GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 654
            +D EV+ + P  VYS        K         +ECAVCL E ED E  R +P+C H FH EC+D WL SH+TCP+CR  +   P    P P E
Sbjct:   99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPE 192          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666
            LD+ V+D  P FVYS  K     +   EC+VCL+EFE+++  RL+PKC H FH +CID W  S +TCP+CR+     P +   Q  E GSS
Sbjct:   81 LDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRA-----PVQPPFQVIETGSS 165          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 630
            LD  +I +FP F YS       G    ECA+CL+EF D++T+RLI  C H FH  CID W E H TCPVCR  L  +PG
Sbjct:   78 LDPFIIRSFPVFHYSSATKKNHGT---ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCEL--DPG 151          
The following BLAST results are available for this feature:
BLAST of FC875266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL1D_ARATH4.277e-1750.00RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL4J_ARATH7.296e-1750.65RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL1O_ARATH9.529e-1754.67RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL1F_ARATH1.625e-1646.59RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL3I_ARATH2.772e-1650.00RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL5F_ARATH3.621e-1651.22RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL3L_ARATH3.621e-1645.35RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
EL5_ORYSJ8.066e-1642.55E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL2N_ARATH1.376e-1546.15RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]
ATL2H_ARATH1.797e-1550.63RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC31402A10EF CTVClemen1 Citrus clementina cDNA clone C31402A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875266 ID=FC875266; Name=FC875266; organism=Citrus clementina; type=EST; length=673bp
GATTTTCACAAATCTCACCGCCTCCTTGCTCTCTCTCTCTCTCTTTCCAA
CTCTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTACCCTACT
CCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTCCTC
GTCGCCAACGCGCTCCCCCTCCCGCTCGCCCAGCGCAGCCCCGAGTCCCC
GGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCA
TAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCC
ATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCTC
CGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCGACC
GCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAGACG
CTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTT
CGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCC
ACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCCGTT
TGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAG
TGAGCTGGGCTCATCCGAGGTGG
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