FC875266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17 Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 621 LD+ +ID P F+Y ++K K +CAVCL EF +D+ LRL+P C H FH +CID WL S++TCP+CR L S Sbjct: 119 LDQALIDALPVFLYKEIKGTKE---PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLFS 191
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 7.296e-17 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 624 LD+ I++ P F +S +K K G L+C+VCL++FE E LRL+PKC H FH CID WLE H TCP+CR ++ E Sbjct: 98 LDKTAIESLPLFRFSALKGSKQG---LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSME 171
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17 Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1 Query: 454 KVGKGALE---CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---------SEPGETTP 642 K G G +E C VCLNEFE+DE+LRL+PKC+H FH CID WL SHT CP+CR+ +A S P E TP Sbjct: 166 KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTP 240
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSEL 657 LD ++I++FP + YS VK G +C++CL EF DD+T+RLI C+H FH CID W E H TCPVCR L E + +P E+ Sbjct: 131 LDSKIIESFPEYPYS-VKD----HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEV 213
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16 Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 621 LD+ ID P F+Y +V T+ + + +CAVCLNEF D + LRL+P C H FH CID WL S++TCP+CR +L++ Sbjct: 181 LDQTAIDALPVFLYGNV-TISLEQ-PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLST 254
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16 Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 454 KVGKGAL---ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN--LASEP----GETTPQPSELGSSEV 672 K G+G + EC+VCLNEFE+DE+LRL+PKC H FH CID WL SH CP+CR+ L +EP ET QP S+++ Sbjct: 124 KKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDL 205
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALE-CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 648 LD V++ P FVYS +K + LE C+VCL+EFE+D+ R++PKC HVFH +CID W S ++CP+CR+ + T P+P Sbjct: 88 LDPTVLEKIPIFVYS----VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEP 169
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16 Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGK-------GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 654 +D EV+ + P VYS K +ECAVCL E ED E R +P+C H FH EC+D WL SH+TCP+CR + P P P E Sbjct: 99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPE 192
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666 LD+ V+D P FVYS K + EC+VCL+EFE+++ RL+PKC H FH +CID W S +TCP+CR+ P + Q E GSS Sbjct: 81 LDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRA-----PVQPPFQVIETGSS 165
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15 Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 630 LD +I +FP F YS G ECA+CL+EF D++T+RLI C H FH CID W E H TCPVCR L +PG Sbjct: 78 LDPFIIRSFPVFHYSSATKKNHGT---ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCEL--DPG 151 The following BLAST results are available for this feature:
BLAST of FC875266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875266 ID=FC875266; Name=FC875266; organism=Citrus clementina; type=EST; length=673bpback to top |