FC875266

Overview
NameFC875266
Unique NameFC875266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875266_ssr29 microsatellite FC875266_ssr29:29..44. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875266_ssr130 microsatellite FC875266_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10192 contig Ccv1_Contig10192:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  445 KTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 618
            + L V   + ECAVCL + E  ++ RL+P C+H FH  C D WL +HT CPVCR+ LA
Sbjct:   93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELA 150          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  400 REVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--ASEPGETTPQPSELGSSE 669
            R+ + +F T  YS    L +     ECA+CL+EF  +E ++L+P C H FH  CID WL SH++CP CR  L    E      Q S L S++
Sbjct:  107 RKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 196          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 636
            L  EVI  FP   Y + +      K       C++CL +++  + +R++P C+H+FH  C+D WL  H TCPVCR++    P  T
Sbjct:   97 LTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMT 181          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 642
            D E I   PT   ++     VG G LEC VC  ++   E++R +P C+H+FH +CI  WLE H TCPVCR +L+ +   T P
Sbjct:  204 DTEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 615
            L ++V+ + P   YS        +  +ECA+CL EF   + LR++P+C H FH  CID WL SH++CP CR  L
Sbjct:   78 LKKKVLRSLPKLTYSPDSP--PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666
            D+E I + PT     V   +V  G LEC VC  ++  +E +R +P C+H FH  CI  WLE H TCPVCR +L  E      Q SE  +S
Sbjct:  206 DKEKITSLPTVT---VTQEQVNTG-LECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASAS 290          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 642
            D E I   PT   ++     VG G LEC VC  ++   E +R +P C+H+FH +CI  WLE H TCPVCR +L+ +   T P
Sbjct:  205 DNEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGECVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 642
            D+E I   PT   ++     VG G LEC VC  ++   E++R +P C+H+FH  CI  WLE H +CPVCR +L  +   T P
Sbjct:  208 DKEKIQALPTVPVTEEH---VGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 284          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  397 DREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 666
            D+E I + PT     V   +V  G LEC VC  ++  +E +R +P C+H FH  CI  WLE H TCPVCR +L  E      Q +E  +S
Sbjct:  205 DKEKITSLPTVT---VTQEQVDMG-LECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASAS 289          
BLAST of FC875266 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  394 LDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 609
            LD  VI + P FVY + +  +  +   EC +CL  +E  +  R +  C H FH ECID WL SH+TCP+CRS
Sbjct:  112 LDSSVISSIPLFVYEENEEEEDEEE--ECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRS 181          
The following BLAST results are available for this feature:
BLAST of FC875266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL5J_ARATH7.066e-1250.00RING-H2 finger protein ATL5J OS=Arabidopsis thalia... [more]
ATL1L_ARATH9.229e-1240.22RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL5D_ARATH1.205e-1135.29Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]
RN126_XENTR1.574e-1142.68RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
ATL1R_ARATH1.574e-1141.89RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
RN115_MOUSE2.056e-1142.22RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
R126A_XENLA2.056e-1142.68RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN126_MOUSE5.982e-1141.46RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN115_HUMAN5.982e-1141.11RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
ATL5O_ARATH5.982e-1144.44RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC31402A10EF CTVClemen1 Citrus clementina cDNA clone C31402A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875266 ID=FC875266; Name=FC875266; organism=Citrus clementina; type=EST; length=673bp
GATTTTCACAAATCTCACCGCCTCCTTGCTCTCTCTCTCTCTCTTTCCAA
CTCTCTCTCCACATCTCATGCAATAATGGGGTCACGACTCTTACCCTACT
CCGCGAAACATGGGACCAATCCCCTTTCTCTCCTCCTCCTCATGCTCCTC
GTCGCCAACGCGCTCCCCCTCCCGCTCGCCCAGCGCAGCCCCGAGTCCCC
GGGCTCCGTCGACCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCA
TAATAATCGTCGTGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCC
ATCTACATCCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCTC
CGGCGCCGGAGGCAACCGCTCCAGGCGCGGCGCCGCCCGTGGCCTCGACC
GCGAGGTCATCGACACTTTCCCGACCTTCGTCTACTCCGACGTCAAGACG
CTGAAGGTCGGCAAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTT
CGAGGACGACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCC
ACCCCGAGTGTATCGACGCCTGGCTTGAATCGCACACCACGTGTCCCGTT
TGCCGCTCGAATTTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAG
TGAGCTGGGCTCATCCGAGGTGG
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