FC875268

Overview
NameFC875268
Unique NameFC875268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10193 contig Ccv1_Contig10193:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875268 vs. ExPASy Swiss-Prot
Match: YGN3_SCHPO (UPF0587 protein C2D10.03c OS=Schizosaccharomyces pombe GN=SPBC2D10.03c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 1 
Query:   67 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESL-AGTQYEDIDLSGGDYAEYDEKGVCPVMISNLRF 528
            L ++A+L  + NL P+   D+ +F Y FK++C GC E+      +S +ET    G KG  NLI  CK C R+    +I G   P       S     +++ +CRG E V+F+    W      + T +++I L   D+ +YDE     V I+NL +
Sbjct:    6 LNLNAELTGVKNLAPK---DEESFYYAFKVQCSGCREIHDNAIEISRSETHSIPGSKGEANLIWTCKNC-RKTCSFVIEGPFSPYN----DSQETKKVLVLECRGCELVEFIPQGEWIANGAESNTLFDEIVLE-DDWYDYDENASSEVSITNLEW 152
The following BLAST results are available for this feature:
BLAST of FC875268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YGN3_SCHPO9.112e-1132.05UPF0587 protein C2D10.03c OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402A12EF CTVClemen1 Citrus clementina cDNA clone C31402A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875268 ID=FC875268; Name=FC875268; organism=Citrus clementina; type=EST; length=733bp
CACGCTGAAAAATAGAGAGAGAATATTTTGGCACTGGAAAGCTAAGCGAA
AATGGTGAATTGCATGCTGATGATCAGCGCCGATCTCGAGAACCTCACCA
ATCTCCAACCTCAAGGCGGCTGCGACGATCCTAACTTCTCTTACTTCTTC
AAGTTGAAGTGTGGATGCGGAGAACTAAGCCAGAAAGAAACTTGTGTGAG
CTTGGCTGAAACTCTTCCTACTCAAGGAGGCAAGGGAACCACAAATCTCA
TTCAAAAATGCAAATTTTGTGGGAGAGAAGGAACTGTTACTATGATCCCA
GGCCGGGGTAAACCATTGACCCAGGAAGCTGCTCAATCTGGCGGTTTTAG
CCCCTTGATGTTATTCGACTGCAGGGGTTATGAGCCTGTGGATTTCGTCT
TTGGTGTTGGATGGAAAGTTGAATCTCTTGCTGGGACTCAGTATGAAGAC
ATTGACTTGTCAGGAGGGGACTATGCCGAGTACGATGAGAAAGGAGTGTG
CCCGGTTATGATTTCCAACCTCCGCTTCAAGTTTGAAGTGGTGAAGCACT
GAAGTAAAGCTCTTCTCTTGGTACATACGCCCTAACTGTTCCTTGTGAAT
GAGGTAGAAACATTTGACTGGATTACATGTAGTATGCAATGTATGGGAGT
TGCTTGACGAAATATGTCTACTTCTGAATTACGTGCATAAGTGCTGTCAT
AACAGCAGTCAACTGGATAATGGCTCGCTAAAT
back to top