FC875269

Overview
NameFC875269
Unique NameFC875269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:52..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 59/226 (26.11%), Postives = 107/226 (47.35%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT-KAEKQYVIA 674
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y+   ++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 59/226 (26.11%), Postives = 106/226 (46.90%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT-KAEKQYVIA 674
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y+   ++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 59/226 (26.11%), Postives = 106/226 (46.90%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT-KAEKQYVIA 674
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y+   ++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 59/226 (26.11%), Postives = 106/226 (46.90%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT-KAEKQYVIA 674
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+++   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y+   ++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15
Identity = 59/226 (26.11%), Postives = 105/226 (46.46%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSL----TNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT-KAEKQYVIA 674
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y+   ++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 59/224 (26.34%), Postives = 106/224 (47.32%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYV 668
            +E+ VKA      I G+CPF QR  + L  K V +    ++++ KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  +G  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y+   +A E F  T  E + +
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEI 235          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 62/239 (25.94%), Postives = 104/239 (43.51%), Query Frame = 3
Query:   54 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSLTNPPEFASL----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKV 692
            A+  +++ VKA+     + G CP  QR  + L  K VP+    ++    P    + +P  ++P++ +D     D+  I   +EE         PP+F SL          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y+      + F+ T      ++A + P V
Sbjct:    2 AETKLQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAV 233          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 59/229 (25.76%), Postives = 108/229 (47.16%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------HGGP------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWA 683
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +EE     KYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L T          HG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y+K  +A + F  T A    +   +A
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARHR-ESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYA 242          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 59/229 (25.76%), Postives = 108/229 (47.16%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLK----------THGGP------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWA 683
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +EE     KYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y+K  +A + F  T A    +   +A
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHR-ESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYA 242          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 60/224 (26.79%), Postives = 104/224 (46.43%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYV 668
            +E+ VKA      I G+CPF QR  + L  K V +    I+ + KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  +G  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y+   +A E F  T  E + +
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFAHTCPEDKEI 235          
The following BLAST results are available for this feature:
BLAST of FC875269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC4_RAT7.203e-1626.11Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB1.605e-1526.11Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE2.737e-1526.11Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN2.737e-1526.11Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC4_HUMAN3.575e-1526.11Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_HUMAN7.964e-1526.34Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC3_HUMAN1.040e-1425.94Chloride intracellular channel protein 3 OS=Homo s... [more]
CLIC5_RAT1.358e-1425.76Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE1.358e-1425.76Chloride intracellular channel protein 5 OS=Mus mu... [more]
CLIC2_RAT2.317e-1426.79Chloride intracellular channel protein 2 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionC31402B01EF CTVClemen1 Citrus clementina cDNA clone C31402B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875269 ID=FC875269; Name=FC875269; organism=Citrus clementina; type=EST; length=735bp
GGTTGTCGGGTTTTCCTAACAGCAACAGACACTCTCTCTGATCACTCAAT
TCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCC
TGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGG
AGGAAAAGAAAGTTCCATACAAGCGTCACCTGATCAATATCAGTGACAAG
CCTCAATGGTTTATGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAA
GTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATTGTTG
AGGAGAAGTATCCTGAGCCTTCTCTTACCAATCCTCCTGAATTTGCCTCT
CTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGA
CCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGG
ATGAGCATCTTAAGACCCATGGAGGTCCATTCATTGCTGGAGAGAAGGTC
ACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGC
TCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCC
ATGGGTACATGAAGAAGCTTTTTGCCCTGGAATCCTTTCAGAAGACTAAG
GCTGAAAAGCAATACGTGATTGCAGGATGGGCGCCGAAAGTCATGCATGA
ACTAGTCTAGCTATGCGTGTTTGAATCTAGCTATG
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