FC875269

Overview
NameFC875269
Unique NameFC875269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:52..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC5_HUMAN (Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 57/229 (24.89%), Postives = 105/229 (45.85%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWA 683
            + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +EE     KYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                    F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y+K  +A + F  T A    +   +A
Sbjct:  175 IYLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHR-ESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYA 401          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC3_MOUSE (Chloride intracellular channel protein 3 OS=Mus musculus GN=Clic3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 60/235 (25.53%), Postives = 99/235 (42.13%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSLTNPPEFASL----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDE--------------HLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKV 692
            +++ VKA+     + G CP  QR  + L  K VP+    ++         + +P  ++P++ +D     D+  I   +EE         PP+F SL          G+ IF  F  F+K+  P  ++   Q LL  L  LD               HL+     F+ G++ T  D SL PKL+ +     HF+Q  +P  L+ V  Y+      + F+ T      ++A + P V
Sbjct:    7 LQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETL------GPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVPTQDNALYQQLLRALTRLDSYLRAPLDHELAQEPHLRESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYTCPHSAEILAAYQPAV 234          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: CLIC5_BOVIN (Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 58/234 (24.79%), Postives = 104/234 (44.44%), Query Frame = 3
Query:   54 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT-----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWA 683
            A   + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +EE     KYP  +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                     F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y+K  +A + F  T A    +   +A
Sbjct:  197 ASPEINLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKHR-ESNTAGIDIFVKFSAYIKNTKQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYA 428          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIVEEKYPEPSLTNPPEFASLG--------SKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 596
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      V +S +    ++E YPE  L     +            SK+ P   +F++SK   D     +AL  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIVEEKYPEPSL--TNPPEFA------SLGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 557
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      + +S +    ++E YPE  L   +P E A       L SK+     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
BLAST of FC875269 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIVEEKYPEPSL--TNPPEFA------SLGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 557
            CPF+QR LL L  K + ++   IN+ +KP+WF + +P G VPV++    + + +S +    ++E YP   L   +P E A       L SK+ P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
The following BLAST results are available for this feature:
BLAST of FC875269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC5_HUMAN2.562e-1324.89Chloride intracellular channel protein 5 OS=Homo s... [more]
CLIC3_MOUSE3.346e-1325.53Chloride intracellular channel protein 3 OS=Mus mu... [more]
CLIC5_BOVIN5.707e-1324.79Chloride intracellular channel protein 5 OS=Bos ta... [more]
GSTO1_MOUSE1.836e-1130.99Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_RAT2.398e-1130.38Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG2.398e-1129.75Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402B01EF CTVClemen1 Citrus clementina cDNA clone C31402B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875269 ID=FC875269; Name=FC875269; organism=Citrus clementina; type=EST; length=735bp
GGTTGTCGGGTTTTCCTAACAGCAACAGACACTCTCTCTGATCACTCAAT
TCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCC
TGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGG
AGGAAAAGAAAGTTCCATACAAGCGTCACCTGATCAATATCAGTGACAAG
CCTCAATGGTTTATGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAA
GTTTGATGACAAGTGGGTGGCTGACTCTGATGTGATTGTTAGAATTGTTG
AGGAGAAGTATCCTGAGCCTTCTCTTACCAATCCTCCTGAATTTGCCTCT
CTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGA
CCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGG
ATGAGCATCTTAAGACCCATGGAGGTCCATTCATTGCTGGAGAGAAGGTC
ACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGC
TCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCC
ATGGGTACATGAAGAAGCTTTTTGCCCTGGAATCCTTTCAGAAGACTAAG
GCTGAAAAGCAATACGTGATTGCAGGATGGGCGCCGAAAGTCATGCATGA
ACTAGTCTAGCTATGCGTGTTTGAATCTAGCTATG
back to top