FC875276

Overview
NameFC875276
Unique NameFC875276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875276_ssr27 microsatellite FC875276_ssr27:27..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig676 contig Ccv1_Contig676:20..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_HYPNO (60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 9.191e-63
Identity = 122/195 (62.56%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_ANGJA (60S ribosomal protein L15 OS=Anguilla japonica GN=rpl15 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 9.191e-63
Identity = 120/195 (61.54%), Postives = 134/195 (68.72%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ   + R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H A+R DP   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSGLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRDPDAQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_SINKN (60S ribosomal protein L15 OS=Siniperca kneri GN=rpl15 PE=2 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 1.200e-62
Identity = 120/195 (61.54%), Postives = 135/195 (69.23%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H A+R +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAVRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_HYDAT (60S ribosomal protein L15 OS=Hydra attenuata GN=RPL15 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.048e-62
Identity = 121/195 (62.05%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVL+SYW+ EDSTYK+FEV+LVD  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLVDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_CARAU (60S ribosomal protein L15 OS=Carassius auratus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.048e-62
Identity = 121/195 (62.05%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVL+SYW+ EDSTYK+FEV+LVD  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVVLVDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_MEGAM (60S ribosomal protein L15 OS=Megalobrama amblycephala GN=rpl15 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.674e-62
Identity = 121/195 (62.05%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ +LWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQKLWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_SILAS (60S ribosomal protein L15 OS=Silurus asotus GN=rpl15 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.562e-62
Identity = 120/195 (61.54%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  R TRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +S+AEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P + W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRATRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSIAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_SILME (60S ribosomal protein L15 OS=Silurus meridionalis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 5.958e-62
Identity = 120/195 (61.54%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGA  ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +S+AEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P + W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R
Sbjct:    1 MGASKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSIAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_EPICO (60S ribosomal protein L15 OS=Epinephelus coioides GN=rpl15 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 5.958e-62
Identity = 121/195 (62.05%), Postives = 134/195 (68.72%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  G LRVLNSYW+ EDSTYK+FEVILVD  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILVDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
[Close]
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_HYPMO (60S ribosomal protein L15 OS=Hypophthalmichthys molitrix GN=rpl15 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 7.781e-62
Identity = 121/195 (62.05%), Postives = 135/195 (69.23%), Query Frame = 1 
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW+ EDSTYK+FEVIL+D  H AIR +P   W+   V KHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR
Sbjct:    1 MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYWVGEDSTYKFFEVILIDTFHKAIRRNPDTQWITKAVRKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKR 194
The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_HYPNO9.191e-6362.5660S ribosomal protein L15 OS=Hypophthalmichthys no... [more]
RL15_ANGJA9.191e-6361.5460S ribosomal protein L15 OS=Anguilla japonica GN=... [more]
RL15_SINKN1.200e-6261.5460S ribosomal protein L15 OS=Siniperca kneri GN=rp... [more]
RL15_HYDAT2.048e-6262.0560S ribosomal protein L15 OS=Hydra attenuata GN=RP... [more]
RL15_CARAU2.048e-6262.0560S ribosomal protein L15 OS=Carassius auratus GN=... [more]
RL15_MEGAM2.674e-6262.0560S ribosomal protein L15 OS=Megalobrama amblyceph... [more]
RL15_SILAS4.562e-6261.5460S ribosomal protein L15 OS=Silurus asotus GN=rpl... [more]
RL15_SILME5.958e-6261.5460S ribosomal protein L15 OS=Silurus meridionalis ... [more]
RL15_EPICO5.958e-6262.0560S ribosomal protein L15 OS=Epinephelus coioides ... [more]
RL15_HYPMO7.781e-6262.0560S ribosomal protein L15 OS=Hypophthalmichthys mo... [more]

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Properties
Property NameValue
Genbank descriptionC31402B08EF CTVClemen1 Citrus clementina cDNA clone C31402B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875276 ID=FC875276; Name=FC875276; organism=Citrus clementina; type=EST; length=689bp
GAAAACCTAGTCGCACAGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGA
GCCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGG
TAAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGT
AAACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAG
GTCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTC
TCAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTG
ATCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAA
TTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTT
CTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCAC
AAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGTTTTGATGT
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