FC875276

Overview
NameFC875276
Unique NameFC875276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875276_ssr27 microsatellite FC875276_ssr27:27..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig676 contig Ccv1_Contig676:20..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 75/188 (39.89%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   61 AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            AY+++ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                         K   QGVT++  ++  + VAEERA R    LRVLNSY + +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    K RPS R+
Sbjct:    5 AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRS 190          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULIY (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 603
            +  Y ++   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULIN (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 603
            +  Y ++   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 603
            +  Y ++   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 603
            +  Y ++   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 603
            +  Y ++   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/187 (39.57%), Postives = 103/187 (55.08%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 603
            +  Y ++   W  ++    + + R R  E+R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METAC (50S ribosomal protein L15e OS=Methanosarcina acetivorans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 73/188 (38.83%), Postives = 102/188 (54.26%), Query Frame = 1
Query:   64 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            Y +V + W+      +  L+  R   +R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA R+   L VLNSYW+ ED  +K+FEVILVDP H  I++D  +NW+C+P  + R  RG TSAG+K RG+  +G    K RPS RA
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWVCDPSSRGRATRGKTSAGRKGRGMATRGKGTEKTRPSIRA 190          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 72/192 (37.50%), Postives = 105/192 (54.69%), Query Frame = 1
Query:   61 AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            AY+++ + W+      +  L   R  E+R+ P++V++ RPTR D+AR LGYKAKQ                         K  + G+  L  + S + +AE RA RK   + VLNSYW+ +D  +K++E+ILVDP H +I +D  ++W+    H+ R  RGLTSAGKK RG R KG    K  PS +A  +R
Sbjct:    5 AYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHDRR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 73/184 (39.67%), Postives = 103/184 (55.98%), Query Frame = 1
Query:   64 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHK 603
            Y ++ + W   QSD  + + R R  E+R+ P++ R+ +PTR ++AR +GYKAKQ                         +P   GV      +  R +AEE+A RK   L VL SY++ ED  YKY+E+I+VDP H  I++DP + WL +P ++ R  RGLTSAGKK RGL   RG KG + HK
Sbjct:    6 YNYIEQTW---QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTVKHK 184          
The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_HALMA7.853e-3039.8950S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15E_SULIY1.750e-2939.5750S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIN1.750e-2939.5750S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIM1.750e-2939.5750S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL1.750e-2939.5750S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK1.750e-2939.5750S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIA1.750e-2939.5750S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_METAC1.750e-2938.8350S ribosomal protein L15e OS=Methanosarcina aceti... [more]
RL15E_UNCMA2.984e-2937.5050S ribosomal protein L15e OS=Uncultured methanoge... [more]
RL15E_SULTO2.984e-2939.6750S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]

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Properties
Property NameValue
Genbank descriptionC31402B08EF CTVClemen1 Citrus clementina cDNA clone C31402B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875276 ID=FC875276; Name=FC875276; organism=Citrus clementina; type=EST; length=689bp
GAAAACCTAGTCGCACAGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGA
GCCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGG
TAAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGT
AAACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAG
GTCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTC
TCAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTG
ATCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAA
TTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTT
CTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCAC
AAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGTTTTGATGT
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