FC875276

Overview
NameFC875276
Unique NameFC875276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875276_ssr27 microsatellite FC875276_ssr27:27..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig676 contig Ccv1_Contig676:20..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_THEAC (50S ribosomal protein L15e OS=Thermoplasma acidophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 78/190 (41.05%), Postives = 103/190 (54.21%), Query Frame = 1
Query:   58 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            G Y  V E W+  +   +  L + R  E+R  PSIVR+  PTR D+AR LG+K+K                      I+ G+ P      +L  ++S + +AEERA  K   + VLNSY++ ED  YKYFEVILVD +H  I NDP I+W+  P +  R  RGLTSAG K RGLR       K+RPS R+
Sbjct:    5 GLYQAVREEWKSLKKSEIYDLVKKRMIEWRHGPSIVRLEHPTRIDRARALGFKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRMAYNKLTRKKSLKLIAEERAADKYPNMEVLNSYYVGEDGLYKYFEVILVDRSHPNIFNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRS 191          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METS5 (50S ribosomal protein L15e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 78/197 (39.59%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   61 AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHK-ARPSRRATWKR 636
            AY+F++  W  ++    + + R R  E+R   ++ R+ +PTR D+AR LGYKAKQ                         +P   GV      +S + +AEE+A RK  GL VL SY++ ED  YKY+EVILVDP +  I +DP+ NWL NP ++ R  RGLTSAG++ RGL   RG KG +H+K AR  +    K+
Sbjct:    5 AYSFMASTWASEEWK--KTVIRQRLVEWRNQNTVTRIEKPTRLDRARALGYKAKQGIIVARVKVEKGGMDKQRPNS--GRRPKRMGVYGFSPAKSLQFIAEEKAARKFPGLEVLGSYYVAEDGKYKYYEVILVDPHNPVIMSDPQFNWLKNPANRGRVFRGLTSAGRRTRGLLKSRGLKGTIHYKIARKKKEREQKK 197          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 73/188 (38.83%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   64 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            Y +V + W+      +  L+  R   +R+  S+ R+ RPTR D+AR LGYKAKQ                        G+ T + G  ++    S + +AE RA RK   L VLNSYW+ ED  +K+FEVILVDP H  I++D  +NW+C+   + R  RG TSAG+K RG+  +G    K RPS RA
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKTRPSIRA 190          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLR 579
            +  Y ++   W  ++       QR+  W  R+ PSIVR+ +PTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L VL SY++ ED  YKY+E+++VDP+H  I++DP+  WL +P +++R  RGLTSAGKK RGLR
Sbjct:    3 LSMYHYIENTWNSEEWKKSVLRQRLIKW--RKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIVMVDPSHPVIKSDPKHKWLQDPSNRNRVFRGLTSAGKKVRGLR 173          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.481e-28
Identity = 75/189 (39.68%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   64 YTFVSELW-RKKQSDVMRFL-QRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            Y +V E W R  +SDV   L  R++ W  R+  S+ R+ RPTR D+AR LGYKAKQ                     +   +    G       +S + +AEERA  +   + VLNSYW+ +D   KY+EVILVD  H +I++D  + WL NP H+ R  RG TSAG+K RG+R +G    K RPS R+
Sbjct:    6 YAYVREAWARPDKSDVKALLWDRMQVW--RREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGMRTRGRGTEKTRPSIRS 190          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 76/193 (39.38%), Postives = 106/193 (54.92%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRR 621
            +  Y ++ + W+ K  D  R + R R  E+R+ P+I R+ RPTR ++AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L VL SY++ ED  YKY+EVI+VD +H  IR+DP + WL + V++ R  RGLTSAG+K RGL   RG KG +  K +  ++
Sbjct:    3 LSMYHYIEQTWQNK--DWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGLTKSRGLKGTVQRKWKKKQK 191          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 75/188 (39.89%), Postives = 102/188 (54.26%), Query Frame = 1
Query:   64 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 624
            Y  + E W+  +   +  +++ R   +R  PS+VR+  PTR D+AR LGYK+K                      I+ G+ P      +L  ++S + +AEERA  K   L VLNSY++ ED  YKY+EVILVD +H  I NDP I+W+  P +  R  RGLTSAG K RGLR       K+RPS RA
Sbjct:    7 YQEIREEWKSLKKSEIYDVEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRA 191          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_PICTO (50S ribosomal protein L15e OS=Picrophilus torridus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 1
Query:   55 MGAYTFVSELWRK-KQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL-HHKARPSRRA 624
            + +Y+ + + W+K K+SD+   +Q+ R   +R+  S+VR+  PTR D+AR LGYKAKQ                     I+ G+ P      +L  ++S + +AEERA  K   + VLNSY++ ED  YKY+EVIL+D +  A+ +D  ++W+ N  +K R  RGLTSAG K RGL G G L   K+RPS RA
Sbjct:    2 LSSYSMIRDSWKKLKKSDIYP-VQKARMVSWRKSGSVVRLDYPTRLDRARSLGYKAKQGFIIVRSRVRKGGQHRPK---IMGGRRPRRLAYNKLTVKKSIQLIAEERAADKYPNMEVLNSYYVGEDGLYKYYEVILIDRSSPAVLSDKNVSWIANSANKGRVYRGLTSAGYKSRGL-GHGRLGSAKSRPSIRA 189          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_NANEQ (50S ribosomal protein L15e OS=Nanoarchaeum equitans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.098e-23
Identity = 71/193 (36.79%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 633
            MG Y +V  L+ K   + +  L + R  ++R+ P IV V RPTR D+AR LGYK                        I  G+             + + +AEERA R    + VL SYW+ ED  YK++EVILVDP +  I N P   WL     + R  RG TS+ +K+RGLR  G    K RPS+RA +K
Sbjct:    1 MGLYQYVRALY-KDPKEFLGELYKQRIQQWRREPPIVEVERPTRIDRARALGYKP---LPGIKIVRVRVRKGTRKREEIKGGRRPKAEYRIRPLGVNLQWIAEERANRLHRNMEVLGSYWVGEDGLYKWYEVILVDPFNPNIYNRPEYVWLLQKNQRGRVFRGKTSSARKFRGLRNGGLGAEKVRPSKRANFK 189          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 65/185 (35.14%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   64 YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 615
            Y +V + W+K     ++ L   R   +R+  ++VR+ RPTR D+AR LGYKAKQ                      + G+ TN+ G+ +    ++ +S+AEERA  +   + VLNSYW+ +D   KY+EVILVD    ++  D  + W+ +   + R  RG TSAG++ RGL  +G    K RPS
Sbjct:    6 YGYVRDAWKKPAESGVKKLLWERMQTWRRQGAVVRLERPTRIDRARELGYKAKQGIIVVRASIRRGGRRKSRY---IRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVILVDRNSPSVLADKNLAWVADT--RGRVFRGKTSAGRRARGLHNRGTGTEKCRPS 185          
The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_THEAC3.898e-2941.0550S ribosomal protein L15e OS=Thermoplasma acidoph... [more]
RL15E_METS53.898e-2939.5950S ribosomal protein L15e OS=Metallosphaera sedul... [more]
RL15E_METMA6.648e-2938.8350S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_SULSO8.683e-2939.4350S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_METB61.481e-2839.6850S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_SULAC1.934e-2839.3850S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15E_THEVO3.300e-2839.8950S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15E_PICTO9.600e-2839.9050S ribosomal protein L15e OS=Picrophilus torridus... [more]
RL15E_NANEQ1.098e-2336.7950S ribosomal protein L15e OS=Nanoarchaeum equitan... [more]
RL15E_METLZ2.447e-2335.1450S ribosomal protein L15e OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionC31402B08EF CTVClemen1 Citrus clementina cDNA clone C31402B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875276 ID=FC875276; Name=FC875276; organism=Citrus clementina; type=EST; length=689bp
GAAAACCTAGTCGCACAGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGA
GCCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGG
TAAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGT
AAACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAG
GTCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTC
TCAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTG
ATCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAA
TTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTT
CTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCAC
AAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGTTTTGATGT
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