FC875467

Overview
NameFC875467
Unique NameFC875467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875467_ssr136 microsatellite FC875467_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875467_ssr21 microsatellite FC875467_ssr21:21..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12842 contig Ccv1_Contig12842:39..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875467 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  121 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWM---------CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 360
            CD C+ A A V C  D A LC  CD+ IH      +KH R+ +         C++C++  A + C  D A LC  CD  IH AN  +  H+R
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
[Close]
BLAST of FC875467 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:  121 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMNK-HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSA--NPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSE 456
            CD C    + V+CR D+A LCL+CD  +H  N ++K H+R  +CE C   PA+V C  +  +LC  CD   H    +     H+R  I  +     S   SS ++F +  + +   E
Sbjct:    5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAEE 121
The following BLAST results are available for this feature:
BLAST of FC875467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STO_ARATH1.997e-1136.96Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
COL10_ARATH3.406e-1132.48Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC31404C06EF CTVClemen1 Citrus clementina cDNA clone C31404C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875467 ID=FC875467; Name=FC875467; organism=Citrus clementina; type=EST; length=771bp
GACTCCGGAGACCAAAACTCAAAGAAAGAAAGAAAGAGGCTTTATTTAGT
AATGCCCATGGGAATTGAATTACATAGCGTGAAGGTTATTTCCGGCGGGT
GGAGCGTGGCGGCGAAGCCATGCGACACTTGCAAAGCGGCGGCGGCGGCT
GTTTTCTGCAGAGTTGACTCTGCTTTCCTATGCCTGAACTGCGATTTAAG
AATCCACAATTGCATGAACAAACACGCGCGTGTCTGGATGTGCGAGGTCT
GCGAGCAGGCCCCTGCGGCTGTCACGTGTAAGGCTGATGCGGCTGCCTTG
TGTGTCACGTGCGACAATGATATCCACTCTGCCAACCCTTTAGCCCGGCG
CCATGAACGCCTCCCTATTGAGCCGTTCTTCGACTCGGCTGACTCGATTG
TCAAGTCGTCGGCTTTTAACTTCCTGGTTCCGAGTGATCAAAATGGCGGC
TCAGAGTTTACTGGCGCCAGTGAACACGACGGCGTGGACTCTGCTTCCTG
GCTGATTCCGAATTCGAAACCTGGAATTGAAAACGCGGGTGAAATGAAAT
CCGGGGATATGTTTTTCATCGATCCGTTTATTGATTTGAATGATTTTGAT
TATCCGAATTCATTTCAGAATCATCATAGCGCTGGCATGGACAGTGTTGT
GCCTGTTCAAACAACTAAACCGGAACCATTCCAGCTCAAGCTGCAGCTCC
AATTCCCTTTGATCACATGAAAATTTGCTCGATATCGATTTCTGTAGATC
CAGCTCTCTTCATTCACTACC
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