FC875468

Overview
NameFC875468
Unique NameFC875468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14327 contig Ccv1_Contig14327:257..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y245_SYNY3 (Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC 6803) GN=slr0245 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 61/174 (35.06%), Postives = 97/174 (55.75%), Query Frame = 2
Query:  200 SSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYP----ANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            S + A LA  + ++  + V   +  + F + RPPGHHA  +  MGFCL NNVA+AA + L  RP  G+ ++ I+DWDVHHGN T+ +   +PR+ + S+H+      YP    A D G +  +         +N+P + G  G   Y   ++H +LP  +   PD++++SAG+D
Sbjct:   91 SYDVARLAVRAWLDGVDHVLN-QREAVFVLARPPGHHAIRNTGMGFCLLNNVAIAAHYALT-RP--GVERVAILDWDVHHGNGTEALVDHNPRIFYCSLHQF---PCYPGTGAAGDRGQHDNV---------LNIPLKPGGDGKV-YREAFEHKVLPFLRQVKPDLLLVSAGYD 247          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAAW (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MW2) GN=acuC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 69/225 (30.67%), Postives = 117/225 (52.00%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++  + A D  L+ +H  ++V  IK+ S     + ++++  +  + NS + +     A  +  G  + +A+ +  G++ +   +     HHA+P  A GFC+YN++A+ A +L  E  +    ++LI+D D HHG+ TQ  F+ D  V  +S+  HE G F +P +  G YT  GE  G G+ +NVP E     DA +L  +   + P  K F PDII+   G D
Sbjct:   50 IVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENSQFKHMHRHSATIV--GGALTLADLIMSGKVLNGCHLGGGL-HHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAAS (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MSSA476) GN=acuC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 69/225 (30.67%), Postives = 117/225 (52.00%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++  + A D  L+ +H  ++V  IK+ S     + ++++  +  + NS + +     A  +  G  + +A+ +  G++ +   +     HHA+P  A GFC+YN++A+ A +L  E  +    ++LI+D D HHG+ TQ  F+ D  V  +S+  HE G F +P +  G YT  GE  G G+ +NVP E     DA +L  +   + P  K F PDII+   G D
Sbjct:   50 IVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENSQFKHMHRHSATIV--GGALTLADLIMSGKVLNGCHLGGGL-HHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA22_DICDI (Type-2 histone deacetylase 2 OS=Dictyostelium discoideum GN=hdaC PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 69/204 (33.82%), Postives = 100/204 (49.02%), Query Frame = 2
Query:  128 SSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHA------EPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVH-RHEFGTFYP--ANDDGFYTMI-GEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            S K F+   D I       +++  S +AA  A+GSV    + V+      AF  +RPPGHHA          + G+CL NNVA+ A +        G ++I +VD+DVHHGN TQ++   D   LF S+H   E   FYP    D G    + G+  G   NI +       G A +L  W + ++P  + + P +I +SAGFD
Sbjct: 1157 SHKDFEGDDDNIYDT----FVSHRSIKAALRASGSVCAAVDSVSRSGYTRAFCAIRPPGHHAGRYGRTSDAPSQGYCLINNVAIGAKYA---SLTAGYSRIAVVDFDVHHGNGTQEILSGDDNFLFISIHVCDEKRYFYPGTGQDVGDIDEVSGQFDGNILNIGL---KRNTGSAVFLQQWMNKIIPRLEAYKPQLIFLSAGFD 1350          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAAC (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain COL) GN=acuC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 68/225 (30.22%), Postives = 116/225 (51.56%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++  + A D  L+ +H  ++V  IK+ S     + ++++  +  + N  + +     A  +  G  + +A+ +  G++ +   +     HHA+P  A GFC+YN++A+ A +L  E  +    ++LI+D D HHG+ TQ  F+ D  V  +S+  HE G F +P +  G YT  GE  G G+ +NVP E     DA +L  +   + P  K F PDII+   G D
Sbjct:   50 IVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSATIV--GGALTLADLIMSGKVLNGCHLGGGL-HHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: APHA_MYCRA (Acetylpolyamine aminohydrolase OS=Mycoplana ramosa GN=aphA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 65/177 (36.72%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  188 LNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCK---DFGPDIIIISAGFD 709
            ++ G+ EAA  +  S I+ A+ +A G   +AF++ RPPGHHA  D   G+C  NN AVAA  LL++    G  KI I+D D HHGN TQ +F++   V F S+H      F   +  G+    G+G G G   N P      G     +VW   L    K    FG + I++S G D
Sbjct:  120 ISPGTWEAALSSMASAIDGADLIAAGH-KAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDK----GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAF--PHFLGYAEETGKGAGAGTTANYP-----MGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVD 284          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAAR (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain MRSA252) GN=acuC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 69/226 (30.53%), Postives = 115/226 (50.88%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGE-LNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++  + A D  L+ +H  ++V  IK+ S     + ++ +  +  + N  + +     A  +  G  + +A+ +  G+ LN     +    HHA+P  A GFC+YN++A+ A +L  E  +    ++LI+D D HHG+ TQ  F+ D  V  +S+  HE G F +P +  G YT  GE  G G+ +NVP E     D+ +L  +   + P  K F PDII+   G D
Sbjct:   50 IVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAMKYGLNDEENGQFKHMHRHSATIV--GGALTLADLIMSGKALNGCH--LGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTEDSSFLECFKLTVEPVVKSFKPDIILSVNGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAAN (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain N315) GN=acuC PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 66/225 (29.33%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++  + A    L+ +H  ++V  IK+ S     + ++++  +  + N  + +     A  +  G  + +A+ +  G++ +   +     HHA+P  A GFC+YN++A+ A ++  E  +    ++LI+D D HHG+ TQ  F+ D  V  +S+  HE G F +P +  G YT  GE  G G+ +NVP E     DA +L  +   + P  K F PDII+   G D
Sbjct:   50 IVQPRIATGDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSATIV--GGALTLADLIMSGKVLNGCHLGGGL-HHAQPGRASGFCIYNDIAITAQYIAKEYNQ----RVLIIDTDAHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAAM (Acetoin utilization protein acuC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 66/225 (29.33%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++  + A    L+ +H  ++V  IK+ S     + ++++  +  + N  + +     A  +  G  + +A+ +  G++ +   +     HHA+P  A GFC+YN++A+ A ++  E  +    ++LI+D D HHG+ TQ  F+ D  V  +S+  HE G F +P +  G YT  GE  G G+ +NVP E     DA +L  +   + P  K F PDII+   G D
Sbjct:   50 IVQPRIATGDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSATIV--GGALTLADLIMSGKVLNGCHLGGGL-HHAQPGRASGFCIYNDIAITAQYIAKEYNQ----RVLIIDTDAHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: PHD1_SCHPO (Histone deacetylase phd1 OS=Schizosaccharomyces pombe GN=phd1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 63/235 (26.81%), Postives = 117/235 (49.79%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+  +  V + + A    +   H E++++ +K ++        ++ A K     + +      G+ E +  +AG+ ++ + ++ +G+ +   AI    G HHA+  EA GFC  N++ +A   +L   P     ++L +D D+HHG+  Q+ F++  RVL  S H++  G F+PA   G +   G   G  + +NVP E+G  GD  Y +++  I+ P    F P  I++  G D
Sbjct:   63 GLHNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTP----DNAEQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASLDASRKLVQGQTD--IAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFP-----RVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYN-GDFFPAT--GNFDENGVKGGKYFALNVPLEDG-IGDEQYTSLFKSIIEPTINTFQPSAIVLQCGAD 282          
The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
Y245_SYNY38.347e-2235.06Uncharacterized protein slr0245 OS=Synechocystis s... [more]
ACUC_STAAW1.205e-2030.67Acetoin utilization protein acuC OS=Staphylococcus... [more]
ACUC_STAAS1.205e-2030.67Acetoin utilization protein acuC OS=Staphylococcus... [more]
HDA22_DICDI3.507e-2033.82Type-2 histone deacetylase 2 OS=Dictyostelium disc... [more]
ACUC_STAAC3.507e-2030.22Acetoin utilization protein acuC OS=Staphylococcus... [more]
APHA_MYCRA1.333e-1936.72Acetylpolyamine aminohydrolase OS=Mycoplana ramosa... [more]
ACUC_STAAR1.740e-1930.53Acetoin utilization protein acuC OS=Staphylococcus... [more]
ACUC_STAAN3.877e-1929.33Acetoin utilization protein acuC OS=Staphylococcus... [more]
ACUC_STAAM3.877e-1929.33Acetoin utilization protein acuC OS=Staphylococcus... [more]
PHD1_SCHPO2.513e-1826.81Histone deacetylase phd1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC31404C07EF CTVClemen1 Citrus clementina cDNA clone C31404C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bp
GATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTT
TAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAA
AATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCG
AAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATGAAGGAT
CATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAG
AGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCC
TGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTATACAACA
ATGTGGCTGTTGCTGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGA
ATCAATAAAATTTTGATTGTTGATTGGGATGTTCACCATGGTAACAGTAC
TCAAAAGATGTTCTGGAAGGATCCCCGTGTCCTATTCTTCTCTGTTCATA
GGCATGAGTTTGGAACTTTTTATCCTGCCAATGATGATGGTTTCTATACT
ATGATTGGTGAAGGACCTGGTTTGGGATACAACATTAATGTCCCTTGGGA
GAATGGGAGGTGCGGTGATGCAGACTATCTGGCAGTTTGGGACCATATTT
TACTTCCTGGTTGCAAGGATTTTGGACCTGACATAATCATAATATCTGCT
GGATTCGATG
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