FC875468

Overview
NameFC875468
Unique NameFC875468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14327 contig Ccv1_Contig14327:257..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 64/238 (26.89%), Postives = 119/238 (50.00%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGS-------SEAAYLAAGSV---IEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ +   VL    A+D++L   H +++V+ +++I+    ++++D+I  +L    + E         S     A GSV   +++   + +  +N A  +     HHA+  EA GFC  N++ +A   LL +       ++L VD D+HHG+  ++ F+   RV+  +V  H+FG ++P    G    IG G G  Y++NVP ++G   D  Y  ++  I+    + F P  +++  G D
Sbjct:   54 GLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITP---ETQQDQIR-QLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH-----ERVLYVDIDIHHGDGVEEAFYATDRVM--TVSFHKFGDYFPGT--GHIQDIGYGSGKYYSLNVPLDDG-IDDESYHLLFKPIMGKVMEIFRPGAVVLQCGAD 272          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 59/237 (24.89%), Postives = 111/237 (46.84%), Query Frame = 2
Query:    8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            N L   G+ R+  +    +A  + +   H+++++  +++I        S++ +  +      + +G  E   L+AG    VA  V   +  +  A+    G HHA+  EA GFC  N++ +A   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG G G  Y +N P  +G   D  Y A++  ++    + F P  +++  G D
Sbjct:   40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVISKVMETFQPSAVVLQCGSD 264          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 60/238 (25.21%), Postives = 115/238 (48.32%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++  +  ++ A  +++L  H+E++V+ ++ ++ +  +  +D     +   ++ E      G  +   + +G  IE A     R+ +  +N +  +     HHA  DEA GFC  N++ +A   LL         ++L +D DVHHG+  Q+ F+   RV+  S H+   G F+P   D     IG   G  Y++NVP  +G   D +YL ++  ++      + P +I++  G D
Sbjct:   50 GLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENINEWKD-----VKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGL-----HHARKDEASGFCYVNDIVLAILELLKFHA-----RVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFG-GDFFPGTGD--IDEIGAKTGKLYSVNVPLADG-IDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGAD 268          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 61/232 (26.29%), Postives = 106/232 (45.69%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ +   +  ++ A    LL  H+E++VN +  +S +  +          N      + +   +   L  G+ ++   ++   +  S  AI    G HHA+ +   GFC  N++ ++   LL   P     +IL +D D+HHG+  Q+ F+   RV   S H++  G F+P   D   T IG   G  + +NVP E+G   D  Y+ ++  I+ P    F P +I+   G D
Sbjct:   63 GLHKIMDLYETRSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQNLYDYTTLYTGASLDATRKLINNQ--SDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHP-----RILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYN-GEFFPGTGD--LTEIGCDKGKHFALNVPLEDG-IDDDSYINLFKSIVDPLIMTFKPTLIVQQCGAD 283          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 59/231 (25.54%), Postives = 110/231 (47.62%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ R   +     A  +++   H++ ++  +K+ +     S   ++  K N      L +G  E   L++G  +  A ++ + +++ A   +    HHA+  EA GFC  N++ +    LL         ++L VD DVHHG+  ++ F+   RV+  +V  H++G F+P   D     IG G G  Y++NVP  +G   D  Y +++  I+    + F P  +++  G D
Sbjct:   50 GLYRNLEIFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQML-KFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGL-HHAKKSEASGFCYTNDIVLGILELLKYH-----KRVLYVDIDVHHGDGVEEAFYTTDRVM--TVSFHKYGDFFPGTGD--LKDIGAGKGKLYSVNVPLRDG-ITDVSYQSIFKPIMTKVMERFDPCAVVLQCGAD 268          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 59/240 (24.58%), Postives = 114/240 (47.50%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNIS-------SKQ---FDSRRDR--IASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            GI ++  +   ++A +  L + H+++++N +K ++       SKQ   F+ R D        N   ++ G S       G  ++V  + ++  +N A  +     HHA+  EA GFC  N++ ++   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG   G  Y++N P ++G   D  Y +++  I+      + P  ++I  G D
Sbjct:   41 GIYKKMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGS------IGCAVKVNSKESDVAINWAGGL-----HHAKKSEASGFCYTNDIVLSILELLKHH-----ERVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGDYFPGTGD--VKDIGADKGKYYSLNFPLKDG-IDDESYQSIFRPIIRSVMDFYRPGAVVIQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2
Query:    8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            N L   G+ R+  +    +A  + +   H+++++  +++I        S++ +  +      + +G  E   L+ G    VA  V   +  +  A+    G HHA+  EA GFC  N++ +A   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG G G  Y +N P  +G   D  Y A++  ++    + F P  +++  G D
Sbjct:   40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2
Query:    8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            N L   G+ R+  +    +A  + +   H+++++  +++I        S++ +  +      + +G  E   L+ G    VA  V   +  +  A+    G HHA+  EA GFC  N++ +A   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG G G  Y +N P  +G   D  Y A++  ++    + F P  +++  G D
Sbjct:   40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2
Query:    8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            N L   G+ R+  +    +A  + +   H+++++  +++I        S++ +  +      + +G  E   L+ G    VA  V   +  +  A+    G HHA+  EA GFC  N++ +A   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG G G  Y +N P  +G   D  Y A++  ++    + F P  +++  G D
Sbjct:   40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2
Query:    8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            N L   G+ R+  +    +A  + +   H+++++  +++I        S++ +  +      + +G  E   L+ G    VA  V   +  +  A+    G HHA+  EA GFC  N++ +A   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG G G  Y +N P  +G   D  Y A++  ++    + F P  +++  G D
Sbjct:   40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264          
The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDA19_ARATH3.397e-1526.89Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDAC1_CHICK4.436e-1524.89Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]
HDA12_DICDI4.436e-1525.21Histone deacetylase B OS=Dictyostelium discoideum ... [more]
HOS2_YEAST9.883e-1526.29Probable histone deacetylase HOS2 OS=Saccharomyces... [more]
HDA1_CAEEL1.291e-1425.54Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
HDA11_DICDI1.686e-1424.58Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC1_RAT2.202e-1424.47Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_PONAB2.202e-1424.47Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_MOUSE2.202e-1424.47Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_HUMAN2.202e-1424.47Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31404C07EF CTVClemen1 Citrus clementina cDNA clone C31404C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bp
GATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTT
TAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAA
AATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCG
AAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATGAAGGAT
CATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAG
AGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCC
TGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTATACAACA
ATGTGGCTGTTGCTGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGA
ATCAATAAAATTTTGATTGTTGATTGGGATGTTCACCATGGTAACAGTAC
TCAAAAGATGTTCTGGAAGGATCCCCGTGTCCTATTCTTCTCTGTTCATA
GGCATGAGTTTGGAACTTTTTATCCTGCCAATGATGATGGTTTCTATACT
ATGATTGGTGAAGGACCTGGTTTGGGATACAACATTAATGTCCCTTGGGA
GAATGGGAGGTGCGGTGATGCAGACTATCTGGCAGTTTGGGACCATATTT
TACTTCCTGGTTGCAAGGATTTTGGACCTGACATAATCATAATATCTGCT
GGATTCGATG
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