FC875468

Overview
NameFC875468
Unique NameFC875468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14327 contig Ccv1_Contig14327:257..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 56/235 (23.83%), Postives = 104/235 (44.26%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A  +     N   AI    G HHA+  EA GFC  N++ +    LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLL--NNKNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A     ++ +  +N A  +     HHA+  EA GFC  N++ +    LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYALNVPLRDG-IDDQSYKHLFQPVINQVVDYYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 59/232 (25.43%), Postives = 105/232 (45.26%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ R+  +    +A  + +   H++++V  ++ I      S   +   + N      + +G  E   L++G    VA  V   +  +  AI    G HHA+  EA GFC  N++ +A   LL         ++L +D D+HHG+  ++ F+   RV+  +V  H++G ++P   D     IG G G  Y +N P  +G   D  Y  ++  I+    + + P  I +  G D
Sbjct:   45 GLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNM-SEYTKQMQRFNVGEDCPVFDGLYEFCQLSSGG--SVAGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNFPLRDG-IDDESYDKIFKPIMCKVMEMYQPSAICLQCGAD 263          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 63/235 (26.81%), Postives = 109/235 (46.38%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIY---LNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++A G+ +   V+    A  + +   HT++++  +  IS  Q     D  ++     Y   + EG  + A    G+ +  A+ + +G+ + A        HHA+ DEA G C Y N AV     L E+     +++L VD D+HHG+  +  F    +V+  S+H+   G F+P   D   T  G G G  Y +NVP+E+G   D  Y   +  ++      F P+ +++  G D
Sbjct:   46 IEAYGLLKYMRVVKPHVASIEEMAVFHTDSYLQHLHKIS--QDGDNDDPQSADFGLGYDCPVVEGIFDYAAAVGGATLTAAQNLLDGKCDVAINWAGG-WHHAKKDEASGSC-YVNDAVLGILKLREK----YDRVLYVDVDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VTDTGLGKGRWYAVNVPFEDG-VRDDRYCQTFTSVMQEVKALFNPEAVVMQLGAD 268          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 54/238 (22.69%), Postives = 107/238 (44.96%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A     ++ +  +N A  +     HHA+  EA GFC  N++ ++   LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQG----FTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVISILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A     ++ +  +N A  +     HHA+  EA GFC  N++ +    LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVISQVVDFYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A     ++ +  +N A  +     HHA+  EA GFC  N++ +    LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVISQVVDFYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A     ++ +  +N A  +     HHA+  EA GFC  N++ +    LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVINQVVDFYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  + +      G  E      G+ ++ A     ++ +  +N A  +     HHA+  EA GFC  N++ +    LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVINQVVDFYQPTCIVLQCGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 52/238 (21.85%), Postives = 104/238 (43.70%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLN----------EGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++ +V    +A   ++   H+E++++ ++ +S              LN+  +           E  S     +     ++  ++ +  +N A  +     HHA+  EA GFC  N++ ++   LL   P     ++L +D D+HHG+  Q+ F+   RV+  S H++    F+P   D +   +G   G  Y +NVP  +G   D  Y  ++  ++      + P  I++  G D
Sbjct:   40 GLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQG----FTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVISILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259          
The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC3_XENLA1.578e-1223.83Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 P... [more]
HDAC3_CHICK1.578e-1222.69Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE... [more]
HDAC1_STRPU1.578e-1225.43Histone deacetylase 1 OS=Strongylocentrotus purpur... [more]
HDAC8_DANRE2.061e-1226.81Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2... [more]
HDAC3_TETNG2.061e-1222.69Histone deacetylase 3 OS=Tetraodon nigroviridis GN... [more]
HDAC3_RAT2.061e-1222.69Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac... [more]
HDAC3_MOUSE2.061e-1222.69Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=... [more]
HDAC3_PONAB2.691e-1222.69Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=... [more]
HDAC3_HUMAN2.691e-1222.69Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=... [more]
HDAC3_DANRE4.591e-1221.85Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC31404C07EF CTVClemen1 Citrus clementina cDNA clone C31404C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bp
GATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTT
TAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAA
AATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCG
AAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATGAAGGAT
CATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAG
AGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCC
TGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTATACAACA
ATGTGGCTGTTGCTGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGA
ATCAATAAAATTTTGATTGTTGATTGGGATGTTCACCATGGTAACAGTAC
TCAAAAGATGTTCTGGAAGGATCCCCGTGTCCTATTCTTCTCTGTTCATA
GGCATGAGTTTGGAACTTTTTATCCTGCCAATGATGATGGTTTCTATACT
ATGATTGGTGAAGGACCTGGTTTGGGATACAACATTAATGTCCCTTGGGA
GAATGGGAGGTGCGGTGATGCAGACTATCTGGCAGTTTGGGACCATATTT
TACTTCCTGGTTGCAAGGATTTTGGACCTGACATAATCATAATATCTGCT
GGATTCGATG
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