FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1) HSP 1 Score: 393.275 bits (1009), Expect = 6.888e-109 Identity = 181/236 (76.69%), Postives = 210/236 (88.98%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW KLQ AG+ +RCVVL S +A+DK+L VHT++HVNL+K+IS+KQ D RR+RIAS+LNSIYLN GSSEAAYLAAGSV+++AE+VAEGEL+ FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+LG+ KILIVDWDVHHGN TQKMFWKDPRVLFFSVHRHE+G FYPA DDG Y M+GEGPG G+NINVPW+ GRCGDADYLA WDHIL+P ++F PD+I +SAGFD Sbjct: 56 IWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFD 291
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 1.486e-103 Identity = 174/236 (73.73%), Postives = 206/236 (87.29%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW KLQ AG+ +RCVVL +A+DK+L VHT+ HVNL+K+IS+K+ DSRR++IAS+L+SIYLN GSSEAAYLAAGSV++VAE+VAEGEL+ FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+L + KILIVDWD+HHGN TQKMFWKD RVL FSVHRH+ G+FYP DDG + M+GEGPG G+NINVPWE G CGDADYLAVW+HIL+P K+F PDII++SAGFD Sbjct: 89 IWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFD 324
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51 Identity = 100/235 (42.55%), Postives = 146/235 (62.13%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISS-KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASF--LLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 L+ G+ RC++L ++ A LL+ H+ +V ++ K D R+ + +SIY+ + A LA G+ + E V GE+ + A+VRPPGHHAEP+ A GFC +N+VAVAA ++ R +ILIVDWDVHHGN TQ +F DP VL+ S+HR++ GTF+P D+G + +G G+G+ +NVPW R GDADYLA W ++LP +F P++++ISAGFD Sbjct: 513 LEEVGLAARCLILPARPALGSELLTCHSAEYVEHLRTTEKMKTRDLHRE--GANFDSIYICPSTFACAKLATGAACRLVEAVLSGEVLNGIAVVRPPGHHAEPNAACGFCFFNSVAVAARHAQIIAGRAL----RILIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTVNVPWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLISAGFD 741 HSP 2 Score: 182.57 bits (462), Expect = 1.847e-45 Identity = 92/236 (38.98%), Postives = 143/236 (60.59%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 I +L G+ RCV + A+ + L+ VH+ +++L++ R +A +S+YL+ S A LA GSV+ + + + E+ + A++RPPGHHA+ + G+C++N++AVAA + + I ++LIVDWDVHHG TQ +F +DP VL+FS+HR+E G F+P ++ IG G G GY INVPW DADY+A + HILLP +F P +++++AGFD Sbjct: 114 IREQLILEGLLGRCVSFQAWFAEKEELMLVHSLEYIDLMETTQYMNEGELRV-LAETYDSVYLHPNSYSCACLATGSVLRLVDALMGAEIRNGMAVIRPPGHHAQHNLMDGYCMFNHLAVAARYAQKKHR---IQRVLIVDWDVHHGQGTQFIFDQDPSVLYFSIHRYEHGRFWPHLKASNWSTIGFGQGQGYTINVPWNQTGMRDADYIAAFLHILLPVASEFQPQLVLVAAGFD 345
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA1_YEAST (Histone deacetylase HDA1 OS=Saccharomyces cerevisiae GN=HDA1 PE=1 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51 Identity = 94/217 (43.32%), Postives = 139/217 (64.06%), Query Frame = 2 Query: 59 KEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 + A + +L VHT+ H+ I++ + K + K +S+Y N S +A L G IE + V EG + ++ A+VRPPGHHAEP A GFCL++NVAVAA +L PE + +I+I+DWD+HHGN TQK F++D +VL+ S+HR E G +YP G Y GEG G G+N N+ W G GDA+Y+ ++ +++P ++F PD++IIS+GFD Sbjct: 124 RAATSEEILEVHTKEHLEFIES-TEKMSREELLKETEKGDSVYFNNDSYASARLPCGGAIEACKAVVEGRVKNSLAVVRPPGHHAEPQAAGGFCLFSNVAVAAKNILKNYPE-SVRRIMILDWDIHHGNGTQKSFYQDDQVLYVSLHRFEMGKYYPGTIQGQYDQTGEGKGEGFNCNITWPVGGVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFD 338
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 5.017e-51 Identity = 99/233 (42.49%), Postives = 140/233 (60.09%), Query Frame = 2 Query: 11 KLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 +L+ G+ RC+ L + A + LL+ H+ +V ++ + K R +S +SIY+ + A LA G+ + E V GE+ + A+VRPPGHHAE D A GFC +N+VAVAA +ILIVDWDVHHGN TQ MF DP VL+ S+HR++ GTF+P D+G + IG G G+ +NV W R GDADYLA W ++LP +F P+++++SAGFD Sbjct: 513 RLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLR-ATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHA--LRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFD 742 HSP 2 Score: 182.185 bits (461), Expect = 2.412e-45 Identity = 93/236 (39.41%), Postives = 142/236 (60.17%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 I +L G+ RCV ++ A+ + L+ VH+ +++L++ R +A +S+YL+ S A LA+GSV+ + + V E+ + AI+RPPGHHA+ G+C++N+VAVAA + + I ++LIVDWDVHHG TQ F +DP VL+FS+HR+E G F+P ++ G G G GY INVPW DADY+A + H+LLP +F P +++++AGFD Sbjct: 115 IKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRV-LADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHR---IRRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFD 346
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.118e-50 Identity = 103/250 (41.20%), Postives = 157/250 (62.80%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVAA L + L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G+N+N+ + G GDA+YLA + +++P +F PD++++S+GFD Sbjct: 682 IWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFD 926
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 1.460e-50 Identity = 102/250 (40.80%), Postives = 157/250 (62.80%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+AA L + L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G+N+N+ + G GDA+YLA + +++P +F PD++++S+GFD Sbjct: 683 IWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFD 927
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 3.252e-50 Identity = 94/218 (43.12%), Postives = 135/218 (61.93%), Query Frame = 2 Query: 56 SKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++EA + LL VH++ + + N + + + +S+Y N S+ A LA GS IE V G++ +AFA+VRPPGHHAEP + GFCL+NNV+V A +L P+ I ++LIVDWD+HHGN TQ F+ DP VL+ S+HR+E G FYP + G GEGPGLG +N+PW GD DY+ + +++P +F PD++I+S GFD Sbjct: 112 AREATLEELLQVHSQEMYDRVTNTEKMSHEDLAN-LEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPDK-IKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFD 327
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 4.247e-50 Identity = 99/256 (38.67%), Postives = 158/256 (61.72%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L + K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+GYN+NV W G GD +YL + +++P ++F PD++++SAGFD Sbjct: 705 IWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFD 955
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 5.547e-50 Identity = 99/256 (38.67%), Postives = 157/256 (61.33%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L + K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+GYN+NV W G GD +YL + +++P +F PD++++SAGFD Sbjct: 703 IWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGMGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFD 953 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |