FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPS (Aminomethyltransferase OS=Yersinia pseudotuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM    +KGKD V FL+K++  DVA L  G    T+   E+GG++DD ++ K  DDH  LVVNA   +KD A +  H+
Sbjct:    2 LQRTPLFPLYAEYGAKTIDFGGWELPVQFS-SIKEEHEAVRTRAGLFDVSHMGEFEVKGKDSVAFLQKMMTNDVAKLTDGRAQYTLMCYEDGGTVDDLLVYKKADDHYLLVVNAANIEKDFAWLSEHV 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ALCBS (Aminomethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +TAL+D H+A GGKMV F GW MPI Y   I E     RQN  +FDVSHM  + + G     +L +L+  DV  + PG    T   N+NGG IDD ++ K +D+   LVVN   R+ DL  +E H   F
Sbjct:    4 RTALYDAHLAAGGKMVDFGGWDMPINYGSQIEEHHA-VRQNAGVFDVSHMTVVDIAGAGARDYLRQLLANDVDRIDPGRALYTGMLNDNGGVIDDLIVYK-RDNDYRLVVNCATRETDLGWMEKHAGGF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPE (Aminomethyltransferase OS=Yersinia pestis GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY 132          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_YERPS1.633e-2145.04Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERP31.633e-2145.04Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_ANOFW2.785e-2141.41Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_ALCBS2.785e-2143.41Aminomethyltransferase OS=Alcanivorax borkumensis ... [more]
GCST_YERPY4.750e-2144.27Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP4.750e-2144.27Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN4.750e-2144.27Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG4.750e-2144.27Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPE4.750e-2144.27Aminomethyltransferase OS=Yersinia pestis GN=gcvT ... [more]
GCST_YERPB4.750e-2144.27Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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