FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECO45 (Aminomethyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECO27 (Aminomethyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECO24 (Aminomethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURM1 (Aminomethyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 47/123 (38.21%), Postives = 61/123 (49.59%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            LK T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  DKD+A
Sbjct:    4 LKHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRARAFFEYAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTADKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHIB3 (Aminomethyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDLFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CYAP8 (Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSV-----ITKVKDDHIYLVVNAGCRDKD----LAHIEAHMKSFTAKGGD 629
            NL +T L D  V    K+  F+GW MP+Q+   + +     R +  +FD+SHM   +L+G + +  L+ LV +D+  L PG    TV  N  GG IDD +     IT+  +    ++VNAG  +KD    L+H++    +F    G+
Sbjct:    3 NLLRTPLFDLIVQQKAKLTEFSGWEMPVQFS-KLKDEHQAVRTDVGMFDISHMGKFALQGTELLKSLQFLVPSDLERLQPGQAQYTVLLNPQGGIIDDIIVYYQGITETGEQRANIIVNAGTTEKDKTWLLSHLDTQKITFKDLSGE 148          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_RALSO (Aminomethyltransferase OS=Ralstonia solanacearum GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 48/127 (37.80%), Postives = 65/127 (51.18%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 596
            L+ T L+  H + G +MV F GW MP+ Y   I E     R++  +FDVSHMC + L G     FL  L+  ++  L  PG    T   N  GG IDD ++   ++D   LVVNAG    D+  I A
Sbjct:    3 LQHTPLNAIHRSLGARMVDFGGWDMPVNYGSQIEEHHA-VRRDAGIFDVSHMCVVDLTGARVRDFLRGLLANNIDKLQTPGKALYTCMLNPKGGVIDDLIVYFFREDWFRLVVNAGTAPTDIEWITA 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PARD8 (Aminomethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            +K T   D H+A G KM  FAG++MPI+Y   I++  +       +FDVSHM    +KG + + F++ +   D + L  G    T F N+ GG +DD ++   + +   LVVNAG  DKD     +H
Sbjct:    1 MKTTPFTDVHIALGAKMHEFAGFNMPIEYS-GIIDEHMTVVNGVGVFDVSHMGEFWVKGPNALAFIQSVTSNDASVLPLGKAQYTCFPNDKGGIVDDLLVYHYEPEKYLLVVNAGNIDKDWEWCVSH 126          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEPIN (Aminomethyltransferase OS=Leptospira interrogans GN=gcvT PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 49/144 (34.03%), Postives = 67/144 (46.53%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK--GGDVSWH 641
            KKT L++ H   G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          N+NGG +DD  I K   +   +  NA   +    H+  H+     K     + WH
Sbjct:    5 KKTPLYETHRTLGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGNPKSILLFLESITCNSVASLSDFQVQYNAILNQNGGLVDDVTIYKFSSEKYMICSNASNYEAVTEHLLEHLPISGVKVDNQSLQWH 147          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEPIC (Aminomethyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvT PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 49/144 (34.03%), Postives = 67/144 (46.53%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK--GGDVSWH 641
            KKT L++ H   G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          N+NGG +DD  I K   +   +  NA   +    H+  H+     K     + WH
Sbjct:    5 KKTPLYETHRTLGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGNPKSILLFLESITCNSVASLSDFQVQYNAILNQNGGLVDDVTIYKFSSEKYMICSNASNYEAVTEHLLEHLPISGVKVDNQSLQWH 147          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_ECO452.284e-1537.40Aminomethyltransferase OS=Escherichia coli O45:K1 ... [more]
GCST_ECO272.284e-1537.40Aminomethyltransferase OS=Escherichia coli O127:H6... [more]
GCST_ECO242.284e-1537.40Aminomethyltransferase OS=Escherichia coli O139:H2... [more]
GCST_BURM12.982e-1538.21Aminomethyltransferase OS=Burkholderia multivorans... [more]
GCST_SHIB33.895e-1537.40Aminomethyltransferase OS=Shigella boydii serotype... [more]
GCST_CYAP83.895e-1532.65Aminomethyltransferase OS=Cyanothece sp. (strain P... [more]
GCST_RALSO5.087e-1537.80Aminomethyltransferase OS=Ralstonia solanacearum G... [more]
GCST_PARD85.087e-1535.43Aminomethyltransferase OS=Parabacteroides distason... [more]
GCST_LEPIN5.087e-1534.03Aminomethyltransferase OS=Leptospira interrogans G... [more]
GCST_LEPIC5.087e-1534.03Aminomethyltransferase OS=Leptospira interrogans s... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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