FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PSESM (Aminomethyltransferase OS=Pseudomonas syringae pv. tomato GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L D H+A G KMV F GW MP+ Y   + E     R++  +FDVSHM  + + G++   +L +L+  DV  L  PG    +   +E  G IDD ++    D +  LVVNA    KDLA +++ +  F
Sbjct:    3 QRTPLFDLHLALGAKMVDFGGWDMPLHYGSQVEEHH-QVRRDCGVFDVSHMNVIDVLGREAKAWLRRLLANDVDKLKTPGRALYSAMLDEQAGVIDDMIVYLTADGY-RLVVNAATGAKDLAWMQSQLGDF 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PSEPK (Aminomethyltransferase OS=Pseudomonas putida (strain KT2440) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFT 614
            ++T L+D H+A G K V F GW MP+ Y  S +E     R +  +FDVSHM  + + G D   +L++L+  DVA L  PG    +   NE GG IDD ++ + +  +  LV NA  R K L  ++     F+
Sbjct:    3 QRTLLYDLHLALGAKTVDFGGWDMPLHY-GSQVEEHHQVRSDCGVFDVSHMTVIDVDGTDATVWLQRLLANDVARLDDPGKALYSPLLNEQGGVIDDLIVYRTETGY-RLVTNAATRAKVLDWLQLQRAGFS 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LISW6 (Aminomethyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   ENGG++DD V+ K  +    LVVNA   +KD
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLSNDIEKIKIGKAQYNIMCYENGGTVDDLVVYKKSETEYILVVNAANTEKD 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LISMO (Aminomethyltransferase OS=Listeria monocytogenes GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + +KG D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   DKD   +  +++      GDVS
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVKGPDSTSYLQYLLSNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTDKDFEWMVKNIR------GDVS 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHIF8 (Aminomethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F  W MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHSWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALG2 (Aminomethyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD +I    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIIYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALEP (Aminomethyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD +I    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIIYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALDC (Aminomethyltransferase OS=Salmonella dublin (strain CT_02021853) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD +I    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIIYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PORGI (Aminomethyltransferase OS=Porphyromonas gingivalis GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            +K T   D H+A G KM  FAG++MPI+Y   I++  +N   N  +FDVSHM    +KG + + FL+K+   D + LA G      F N +GG +DD ++ + +++   +V NA    KD A
Sbjct:    1 MKTTPFTDVHIALGAKMHEFAGYNMPIEY-GGIIDEHMNVVNNVGVFDVSHMGEFWVKGPNALRFLQKVSSNDASKLAVGQVQYCCFPNNDGGIVDDFLLYRYEEEKYMMVPNAANIAKDWA 121          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PORG3 (Aminomethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            +K T   D H+A G KM  FAG++MPI+Y   I++  +N   N  +FDVSHM    +KG + + FL+K+   D + LA G      F N +GG +DD ++ + +++   +V NA    KD A
Sbjct:    1 MKTTPFTDVHIALGAKMHEFAGYNMPIEY-GGIIDEHMNVVNNVGVFDVSHMGEFWVKGPNALRFLQKVSSNDASKLAVGQVQYCCFPNNDGGIVDDFLLYRYEEEKYMMVPNAANIAKDWA 121          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_PSESM8.677e-1535.88Aminomethyltransferase OS=Pseudomonas syringae pv.... [more]
GCST_PSEPK8.677e-1536.36Aminomethyltransferase OS=Pseudomonas putida (stra... [more]
GCST_LISW68.677e-1535.00Aminomethyltransferase OS=Listeria welshimeri sero... [more]
GCST_LISMO8.677e-1533.09Aminomethyltransferase OS=Listeria monocytogenes G... [more]
GCST_SHIF81.133e-1436.64Aminomethyltransferase OS=Shigella flexneri seroty... [more]
GCST_SALG21.133e-1434.23Aminomethyltransferase OS=Salmonella gallinarum (s... [more]
GCST_SALEP1.133e-1434.23Aminomethyltransferase OS=Salmonella enteritidis P... [more]
GCST_SALDC1.133e-1434.23Aminomethyltransferase OS=Salmonella dublin (strai... [more]
GCST_PORGI1.133e-1436.89Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_PORG31.133e-1436.89Aminomethyltransferase OS=Porphyromonas gingivalis... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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