FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURA4 (Aminomethyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  +KD+A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTAEKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNP6 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI--TKVKD--DHIYLVVNAGCRDKDLAHIEAHM 602
            +L  + LH    + G +   FAGW +P+Q++  +M+  L  R+   LFD+SHM    L+G      L++L+ +D+  L PG    +V  NE GG +DD ++    + D  +  +L+VNA   D D   +  H+
Sbjct:    8 SLLSSPLHSVCTSAGARFTGFAGWELPLQFQ-GLMQEHLAVRERAGLFDISHMGKFQLRGSGLRAALQRLLPSDLTTLLPGQAQYSVLLNEAGGCLDDLIVYWQGIVDGVEQAFLIVNAATTDSDRLWLTEHL 139          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNE7 (Aminomethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI--TKVKD--DHIYLVVNAGCRDKDLAHIEAHM 602
            +L  + LH    + G +   FAGW +P+Q++  +M+  L  R+   LFD+SHM    L+G      L++L+ +D+  L PG    +V  NE GG +DD ++    + D  +  +L+VNA   D D   +  H+
Sbjct:    8 SLLSSPLHSVCTSAGARFTGFAGWELPLQFQ-GLMQEHLAVRERAGLFDISHMGKFQLRGSGLRAALQRLLPSDLTTLLPGQAQYSVLLNEAGGCLDDLIVYWQGIVDGVEQAFLIVNAATTDSDRLWLTEHL 139          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SACD2 (Aminomethyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            L +T L   H   GGKMV F GW MP+ Y   + E     R +  +FDVSHM  + + G     FL+ ++  DVA L   G    +   N  GG +DD ++  ++  +  +VVN   R+KDLA +  H K F
Sbjct:    2 LNETVLAPLHREIGGKMVDFGGWDMPLHYGSQVEEHQ-KVRTDAGMFDVSHMTVVDVTGAGAKTFLQYVLANDVAKLTKNGKALYSGMLNHEGGVVDDLIVYLMEWGY-RVVVNCATREKDLAWMVEHAKGF 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURVG (Aminomethyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  +KD+A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHALANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTAEKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROMS (Aminomethyltransferase OS=Prochlorococcus marinus (strain AS9601) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHM 602
            +L K+ L+  +V +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++KL   ++     G G  TV  N+ GG IDD +I  +   K+D   + L+VNA   ++D   I+ ++
Sbjct:    2 DLLKSPLYSKYVESNAKLVDFAGWEMPISFSGLIKEHE-SVRYSAGLFDISHMGVISIKGINPKDYIQKLFPTNLYSFCEGQGLYTVMLNDKGGIIDDLIIYDLGIQKNDISELLLIVNASRYEEDFQWIKNNL 134          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURS3 (Aminomethyltransferase OS=Burkholderia sp. (strain 383) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCLE (Aminomethyltransferase OS=Mycobacterium leprae GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 560
            +DA  L K  L D H   G     F GW MP+ Y  ++ E +   R    LFDVSH+    ++G     F+  ++  D+  + PG    T+  +E+GG IDD +   V DD I+LV NA
Sbjct:    2 TDAPELLKGPLEDRHRELGANFAEFGGWLMPVSYAGTVSEHSAT-RNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDLIAYYVDDDEIFLVSNA 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCLB (Aminomethyltransferase OS=Mycobacterium leprae (strain Br4923) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 560
            +DA  L K  L D H   G     F GW MP+ Y  ++ E +   R    LFDVSH+    ++G     F+  ++  D+  + PG    T+  +E+GG IDD +   V DD I+LV NA
Sbjct:    2 TDAPELLKGPLEDRHRELGANFAEFGGWLMPVSYAGTVSEHSAT-RNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDLIAYYVDDDEIFLVSNA 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LISIN (Aminomethyltransferase OS=Listeria innocua GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 40/120 (33.33%), Postives = 61/120 (50.83%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + ++G D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   +KD
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVEGPDSTSYLQYLLSNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTEKD 122          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BURA43.297e-1436.59Aminomethyltransferase OS=Burkholderia ambifaria (... [more]
GCST_SYNP65.625e-1431.58Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNE75.625e-1431.58Aminomethyltransferase OS=Synechococcus elongatus ... [more]
GCST_SACD25.625e-1435.61Aminomethyltransferase OS=Saccharophagus degradans... [more]
GCST_BURVG5.625e-1436.59Aminomethyltransferase OS=Burkholderia vietnamiens... [more]
GCST_PROMS7.346e-1434.33Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_BURS39.594e-1435.77Aminomethyltransferase OS=Burkholderia sp. (strain... [more]
GCST_MYCLE1.253e-1335.29Aminomethyltransferase OS=Mycobacterium leprae GN=... [more]
GCST_MYCLB1.253e-1335.29Aminomethyltransferase OS=Mycobacterium leprae (st... [more]
GCST_LISIN1.253e-1333.33Aminomethyltransferase OS=Listeria innocua GN=gcvT... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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