FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURCC (Aminomethyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 44/123 (35.77%), Postives = 59/123 (47.97%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +   V  L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHAA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANHVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROM2 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 45/134 (33.58%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHM 602
            +L K+ L+  +V +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++KL   ++   + G G  TV  N+ GG IDD +I  +   ++D   + L+VNA   ++D   I+ ++
Sbjct:    2 DLLKSPLYSKYVESNAKLVNFAGWEMPISFSGLIKEHE-SVRSSAGLFDISHMGVISIKGINPKDYIQKLFPTNLYSFSEGQGLYTVMLNDKGGIIDDLIIYDLGIQENDLSELLLIVNASRYEEDFQWIKNNL 134          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROM0 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHM 602
            +L+K+ L+  ++ +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++K    ++   + G G  TV  N+ GG IDD +I  +   ++D   + L+VNA   ++D   I+ ++
Sbjct:    2 DLRKSPLYSKYIESNAKLVDFAGWEMPISFSGLIKEHE-SVRSSAGLFDISHMGVISVKGINPKDYIQKFFPTNLYSFSEGQGLYTVMLNDKGGIIDDLIIYDLGIQENDITELLLIVNASRYEEDFQWIKNNL 134          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LISMH (Aminomethyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + ++G D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA    KD   +  +++      GDVS
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVEGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTAKDFEWMVKNIQ------GDVS 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_HALHL (Aminomethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 48/140 (34.29%), Postives = 68/140 (48.57%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL--APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI--EAHMKSFTAKGGD 629
            ++T L+D HV  G ++V FAGW MP+ Y   + E     R +  LFDVSHM    L G      L + +  DVA L   PG    +   N  GG +DD ++   +D    +V NA  R+K    +  +AH    TA+  D
Sbjct:    3 QRTPLYDQHVGAGARVVDFAGWEMPLHYGSQLAEHQA-VRSDVGLFDVSHMAVTDLSGPGARALLREQLANDVAKLDGRPGQALYSCLLNGRGGVVDDLIVYLREDASYRVVSNAATREKVRPRLLEQAHAAGVTAEARD 141          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CORJK (Aminomethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            LKKTALH  H   G +   F GW MP++Y   + E     R    +FD+SHM  + + G     FL+  +I+ ++ +  G    ++   E+GG IDD +  ++ D+   +V NAG  D  ++ ++   + F
Sbjct:    4 LKKTALHLVHEKLGARFTDFGGWDMPLKYSSELDEHHA-VRNAVGVFDLSHMGEVRVTGPQAAEFLDHALISKLSAVKVGKAKYSMICTESGGIIDDLITYRLGDNEFLIVPNAGNVDNVVSALQGRTEGF 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEON (Probable aminomethyltransferase OS=Thermococcus onnurineus (strain NA1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDE 653
            K+  + D+H  N  K+  FAGW MPI Y  SI +  L  R   ++FDVSHM     KGKD + FL+ +   D++     +GT T+  NE G   D++++  + +D   +V ++   +K  A   A +K    K G++   I ++
Sbjct:    3 KRVHIFDWHKKNAKKVEEFAGWEMPIWYS-SIKDEHLAVRNGVAIFDVSHMGEFIFKGKDALEFLQYVTTNDISKPPAISGTYTLVLNERGAVKDETLVFNMGNDTYMMVCDSDAFEKLEAWFNA-IKRGIEKFGELDLEIENK 144          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PYRKO (Probable aminomethyltransferase OS=Pyrococcus kodakaraensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 46/145 (31.72%), Postives = 75/145 (51.72%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDE 653
            +K+  + D+H  +  K+  FAGW MPI Y  SI E  L  R    +FDVSHM     +GKD + FL+ +   D++     +GT T+  NE G   D++++  + +D   +V ++   +K  A   A +K    K GD+   I ++
Sbjct:    2 VKRVHIFDWHKEHAKKVEEFAGWEMPIWYS-SIKEEHLAVRNGVGIFDVSHMGEFIFRGKDALEFLQYVTTNDISKPPAISGTYTLVLNERGAVKDETLVFNMGNDTYMMVCDSDAFEKLDAWFNA-IKRGIEKFGDIDLEIENK 144          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROMP (Aminomethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKD-----DHIYLVVNAGCRDKDLAHIEAHMKS 608
            +L K+ L+  ++ +  K+V FAGW MPI +   I E   + R +   FD+SHM  +SL+G +   +++K    ++   + G G  T+  NE GG IDD +I  +         I+L+VNA     D + I+ ++ +
Sbjct:    2 DLLKSPLYSKYIESNAKLVNFAGWEMPISFSGLINEHE-SVRTSAGFFDISHMGVISLRGINPKEYIQKFFPTNLYSFSEGQGLYTLMLNEKGGIIDDLIIYDLGQQEEDISEIFLIVNASRYQTDFSWIKNNLNT 136          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STRCO (Aminomethyltransferase OS=Streptomyces coelicolor GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 40/146 (27.40%), Postives = 72/146 (49.32%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER 656
            L++TAL   H A G  M  FAGW MP++Y  S  E  +  R    LFD+SHM  +++ G      L   ++ ++  + PG    T+   E+GG +DD ++ ++++    +V NA       ++ +  + + T +       + D+R
Sbjct:    6 LRRTALDATHRALGATMTDFAGWDMPLRY-GSEREEHVAVRTRAGLFDLSHMGEITVTGPQAAELLNFALVGNIGTVKPGRARYTMICREDGGILDDLIVYRLEEAEYMVVANA-------SNAQVVLDALTERAAGFDAEVRDDR 143          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BURCC1.253e-1335.77Aminomethyltransferase OS=Burkholderia cenocepacia... [more]
GCST_PROM21.636e-1333.58Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PROM02.137e-1332.09Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_LISMH2.137e-1331.65Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_HALHL2.137e-1334.29Aminomethyltransferase OS=Halorhodospira halophila... [more]
GCST_CORJK2.791e-1330.53Aminomethyltransferase OS=Corynebacterium jeikeium... [more]
GCST_THEON6.219e-1331.94Probable aminomethyltransferase OS=Thermococcus on... [more]
GCST_PYRKO6.219e-1331.72Probable aminomethyltransferase OS=Pyrococcus koda... [more]
GCST_PROMP8.122e-1330.88Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_STRCO1.061e-1227.40Aminomethyltransferase OS=Streptomyces coelicolor ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
back to top