FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEGJ (Probable aminomethyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDE 653
            +K+  + D+H  +  K+  FAGW MPI Y  SI E  L  R    +FDVSHM     +GKD + FL+ +   D++     +GT T+  NE G   D++++  + +D   +V ++   +K  A   A +K    K G +   I ++
Sbjct:    2 VKRVHIFDWHKEHAKKVEEFAGWEMPIWYS-SIKEEHLAVRNGVGIFDVSHMGEFIFRGKDALEFLQYVTTNDISKPPAISGTYTLVLNERGAVKDETLVFNLGNDTYMMVCDSDAFEKLEAWFNA-IKRGIEKFGSIDLEIENK 144          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCTU (Aminomethyltransferase OS=Mycobacterium tuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 41/119 (34.45%), Postives = 55/119 (46.22%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 560
            SD   L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+   E+GG IDD +   V DD I+LV NA
Sbjct:    2 SDVPELIHGPLEDRHRELGASFAEFGGWLMPVSYAGTVSEHNAT-RTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDDLIAYYVSDDEIFLVPNA 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCBO (Aminomethyltransferase OS=Mycobacterium bovis GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 41/119 (34.45%), Postives = 55/119 (46.22%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 560
            SD   L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+   E+GG IDD +   V DD I+LV NA
Sbjct:    2 SDVPELIHGPLEDRHRELGASFAEFGGWLMPVSYAGTVSEHNAT-RTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDDLIAYYVSDDEIFLVPNA 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACSK (Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L +T L++ +   G K V F GW +P+ +   I +     R    LFDVSHM  L ++G D +  L+ LV  D++ L            E+GG++DD ++ +  ++   LV+NA     D+  I AH+
Sbjct:    5 LLRTPLYELYDQAGAKTVDFGGWELPVSFS-GIKKEHHAVRNAAGLFDVSHMGELLVEGPDALNNLQALVTNDLSKLQDNQAQYNAMCTESGGTVDDLIVYRRNENAYLLVLNAANIQSDIEWIRAHV 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SACEN (Aminomethyltransferase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 39/138 (28.26%), Postives = 64/138 (46.38%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            ++T LH+ H A G     FAGW MP++Y     E     R    LFD++HM  + + G      L+  ++A+ + +  G    T+  N  GG +DD ++ ++ +    +V NA       A +   +  F A   DVS
Sbjct:    5 RQTPLHEIHEALGATFTEFAGWRMPLRYTGDAAEHNA-VRTAAGLFDLTHMGEIRISGPQAPEALDYALVANASAITVGRARYTMICNSEGGVLDDLIVYRLGEQEYLVVANAANAAVVSAELAERVARFEASHEDVS 141          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PYRFU (Probable aminomethyltransferase OS=Pyrococcus furiosus GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA---HIEAHMKSFTAKGGDVSWHIHD 650
            K+  L D+H  +  K+  FAGW MPI Y  SI E  L  R    +FDVSHM  +  KGKD + FL+     D++     +GT T+  NE G   D++++  + ++   ++ +A   +K  A   +++  ++ FT    ++    +D
Sbjct:    3 KRVHLFDWHKEHAKKIEEFAGWEMPIWYS-SIKEEHLAVRNAVGVFDVSHMGEILFKGKDALKFLQYTTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDADAFEKLYAWFTYLKKTIEQFTKLDLEIELKTYD 147          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROM5 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 41/136 (30.15%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-----KDDHIYLVVNAGCRDKDLAHIEAHMKS 608
            +L K+ L+  ++ +  K++ FAGW MPI +   I E   + R +   FD+SHM  +SL+G +   +++K    ++   + G G  T+  NE GG IDD +I  +         I+L+VNA     D   I+ ++ +
Sbjct:    2 DLLKSPLYSKYIESNAKLINFAGWEMPISFSGLINEHE-SVRTSAGFFDISHMGVISLRGINPKEYIQKFFPTNLYSFSEGQGLYTLILNEKGGIIDDLIIYDLGRQEGDISEIFLIVNASRYQDDFLWIKNNLNT 136          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCPA (Aminomethyltransferase OS=Mycobacterium paratuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 41/119 (34.45%), Postives = 57/119 (47.90%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 560
            S+  +L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA
Sbjct:    2 SNEADLLHGPLEDRHRDLGASFAEFGGWLMPVSYAGTVSEHNAT-RNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDDLIAYYVDDDEIFLVPNA 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_MYCA1 (Aminomethyltransferase OS=Mycobacterium avium (strain 104) GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 41/119 (34.45%), Postives = 57/119 (47.90%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNA 560
            S+  +L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA
Sbjct:    2 SNEADLLHGPLEDRHRDLGASFAEFGGWLMPVSYAGTVSEHNAT-RNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDDLIAYYVDDDEIFLVPNA 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROAC (Aminomethyltransferase OS=Propionibacterium acnes GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 40/139 (28.78%), Postives = 64/139 (46.04%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L++T L   H + G     FAGW+MP++Y   + E     R+N  +FD+SHM  + + G D    L+  +   ++ +A G    ++   + GG +DD V   + D    +V NA   + DLA        F     D S
Sbjct:    4 LRRTPLAAVHESLGASFTDFAGWNMPVRYSSDLAEHHA-VRKNAGIFDLSHMGEIRISGPDSGAALDYALAGKLSAVAEGRAKYSLLLTDEGGVVDDLVTYHLPDGDYLVVANAANAETDLAEFTKRCARFDVTVTDES 141          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_THEGJ2.363e-1231.03Probable aminomethyltransferase OS=Thermococcus ga... [more]
GCST_MYCTU2.363e-1234.45Aminomethyltransferase OS=Mycobacterium tuberculos... [more]
GCST_MYCBO2.363e-1234.45Aminomethyltransferase OS=Mycobacterium bovis GN=g... [more]
GCST_BACSK2.363e-1231.25Aminomethyltransferase OS=Bacillus clausii (strain... [more]
GCST_SACEN3.086e-1228.26Aminomethyltransferase OS=Saccharopolyspora erythr... [more]
GCST_PYRFU3.086e-1230.14Probable aminomethyltransferase OS=Pyrococcus furi... [more]
GCST_PROM53.086e-1230.15Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_MYCPA4.031e-1234.45Aminomethyltransferase OS=Mycobacterium paratuberc... [more]
GCST_MYCA14.031e-1234.45Aminomethyltransferase OS=Mycobacterium avium (str... [more]
GCST_PROAC5.264e-1228.78Aminomethyltransferase OS=Propionibacterium acnes ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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