FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ALKMQ (Aminomethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            EN KKT L   +  + GK++ F GW+MP+Q++  I E     R N  LFDVSHM  + +KGKD + F++ L+  D + +       +    ENGG +DD ++ K ++D+ YLV+NAG  +KD
Sbjct:    2 ENSKKTPLFTVYEKHKGKLIDFGGWAMPVQFEGIIPEHEA-VRSNAGLFDVSHMGEVEIKGKDALNFVQYLITNDASQMEKNQIIYSFMCYENGGVVDDLLVYKFEEDYFYLVINAGNIEKD 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNP2 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKG 623
            L++T LHD  +A G K VPF+GW M +QYK   +E     R    +FD+SHM    L G++ +  ++KLV +++A LAPG    TV  N++GG IDD +     D   +L+VNA    KD   +  H+   TA+G
Sbjct:    3 LQRTPLHDLAIAAGAKFVPFSGWEMAVQYKGLKVEHQA-VRTEVGMFDISHMGKFQLAGENLIAAMQKLVPSNLARLAPGQAQYTVLLNDHGGIIDDVIYYHQGDRQGFLIVNAATTQKDWDWLTHHL---TAQG 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_EDWI9 (Aminomethyltransferase OS=Edwardsiella ictaluri (strain 93-146) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y  S +E     R +  +FDVSHM  + L G     FL  L+  DVA L  PG    +   N +GG IDD ++  + D H  LVVN+  R++DLA I  H  +F
Sbjct:    3 KQTVLYDQHVAEGARMVDFHGWMMPLHY-GSQLEEHHAVRSDAGMFDVSHMTIVDLHGVRVRDFLRHLLANDVARLTQPGKALYSAMLNASGGVIDDLIVYFMADHHFRLVVNSATRERDLAWIGEHAPAF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THETN (Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +NLKKT L++ +     K++ FAGW+MP+Q++  I E     R    LFDVSHM  + +KGKD  PFL+ L+  D++ L       T   N NGG IDD ++ K  +++  LVVNA   +KD
Sbjct:    8 DNLKKTPLYEIYPKYNAKIIDFAGWAMPVQFESIISEHEA-VRNAAGLFDVSHMGEIIVKGKDAFPFLQNLLTNDLSKLNDNQVLYTFMCNHNGGVIDDLLVYKYSNNYYLLVVNAANIEKD 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROA2 (Aminomethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19
Identity = 50/131 (38.17%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL+ +H A G K++ F G+ MP+QY   I E T   R +  LFDVSHM    +KG+    FL+ +   DV  L+ G    T+     GG +DD +I ++  D  ++VVNA   +KD + ++ H+ SF
Sbjct:    1 MKKTALYAWHEAAGAKIIDFGGYLMPVQYSGIIAEHTC-VRTSAGLFDVSHMGNFMVKGRGAKAFLQHMTSNDVDKLSDGQAQYTLLLYPEGGIVDDLIIYRIDADTWFMVVNASNMEKDYSWLQEHLGSF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CLOB6 (Aminomethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM   ++KGKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEATVKGKDAQKFVQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWILDHKGDFDVEIVDVS 141          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STRMK (Aminomethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KT L+D H A G KMV F GW MPI Y   + E  L  R++G +FDVSHM  + L+G    PFL +L+   V  L  PG    +   N  GG IDD ++  + DD   +VVNA  R+KDLA +      F
Sbjct:    3 QKTLLNDTHRALGAKMVDFGGWDMPIHYGSQLDEHHLVRRESG-VFDVSHMTVVDLRGDQVRPFLRRLLANSVDKLKVPGKALYSCMLNPRGGVIDDLIVYYLGDDFFRMVVNASTREKDLAWLREQAAPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_GEOTN (Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            LK+T L   +   G K V F GW MP+Q+  SI E     R    LFDVSHM  + ++G   +PFL+KL+  DVA L PG    T+  +E+ G++DD +I +  +D   LVVNA   +KD A +  H
Sbjct:    2 LKRTPLFPVYARYGAKTVEFGGWEMPVQFS-SIKEEHNAVRTRAGLFDVSHMGEIIVRGGGSLPFLQKLMTNDVAKLRPGRVQYTLMCDESAGTVDDLLIYQKGEDDYLLVVNAANTEKDFAWLSEH 127          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_DEIDV (Aminomethyltransferase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            LK+T LH  H+  G +MVPF GW MP+QY     E     R++  +FDVSHM    ++G+  + FL+ +   DV+ L PG        N+ GG +DD  I  V ++   +VVNA   DKD AH++     F
Sbjct:    9 LKRTPLHAAHLRAGARMVPFGGWDMPVQYSGLKAEHQA-VRESAGVFDVSHMGEFRIQGEGALAFLQHVTPNDVSKLRPGRAQYNWLPNDRGGLVDDIYIYMVGENEYLMVVNASNIDKDWAHLQTLAAGF 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHLT3 (Aminomethyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gcvT PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            +K T LH  H   G K+V FAG+ MP+QY D I+      R+   LFDVSHM    +KGK    FL+ +   DV  L  G    ++   E+GG +DD ++ K+ D+H +L+VNA   +KD   ++ H
Sbjct:    1 MKYTPLHKIHQQLGAKLVDFAGFEMPVQY-DGILVEHKAVREAVGLFDVSHMGEFEVKGKGAKAFLQNMTTNDVESLCDGKAQYSLLLYEDGGVVDDLLVYKIADEHYFLIVNASNIEKDFDWLKQH 126          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_ALKMQ1.528e-1939.34Aminomethyltransferase OS=Alkaliphilus metalliredi... [more]
GCST_SYNP21.996e-1939.26Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_EDWI91.996e-1941.98Aminomethyltransferase OS=Edwardsiella ictaluri (s... [more]
GCST_THETN2.607e-1940.98Aminomethyltransferase OS=Thermoanaerobacter tengc... [more]
GCST_PROA22.607e-1938.17Aminomethyltransferase OS=Prosthecochloris aestuar... [more]
GCST_CLOB62.607e-1939.01Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_STRMK3.404e-1941.98Aminomethyltransferase OS=Stenotrophomonas maltoph... [more]
GCST_GEOTN3.404e-1940.94Aminomethyltransferase OS=Geobacillus thermodenitr... [more]
GCST_DEIDV3.404e-1938.17Aminomethyltransferase OS=Deinococcus deserti (str... [more]
GCST_CHLT33.404e-1938.58Aminomethyltransferase OS=Chloroherpeton thalassiu... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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