FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:356..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 58/196 (29.59%), Postives = 87/196 (44.39%), Query Frame = 2
Query:  173 LPADFDWRE---KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD---RGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            LP  +DWR       V PV++Q SCGSC++F++T  LE    + T    +  LS Q++V C              GC GG          +  GL+ E  +PY G+D   + + C    S     V  F   + +E  +   LV++GP+AVA             +Y  T   G+  P+      +H V+LVGYG+
Sbjct:  204 LPTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSCSQYA---------QGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPCKPNDCFRYYSSEYYYVGGF-YGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHT---GLRDPFNPFELTNHAVLLVGYGT 386          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 43/148 (29.05%), Postives = 72/148 (48.65%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYL---GLRRKLRLPKDADQ---APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 481
            +   SDL+  EF+  +L       +L+   D +    A  + +  LP++ D R    V P++ QG CGSCW+FS   + E A        + L+EQ+LVDC          +  +GC+G  +    EY ++  G+++E  YPY   ++
Sbjct:   64 INHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC----------ASQNGCHGDTIPRGIEY-IQQNGVVQEHYYPYVAREQ 200          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 42/147 (28.57%), Postives = 69/147 (46.94%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRR-----KLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 481
            +   SDL+  EF+  +L         K +   +A+        + PA+ D R+   V P++ QG CGSCW+FS   A E A      + + L+EQ+LVDC          +   GC+G  +    EY ++  G+++E  Y Y   ++
Sbjct:   64 INHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC----------ASQHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQ 199          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATC_CANFA1.336e-1129.59Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
PEPT1_EURMA2.278e-1129.05Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
PEPT1_DERPT2.278e-1128.57Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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