FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:356..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 88/180 (48.89%), Postives = 108/180 (60.00%), Query Frame = 2
Query:  176 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVVLVGYG 703
            P   DWREKG V PVKDQG CGSCW+FSTTGALEG +F   GKLVSLSEQ LVDC     PE     + GCNGGLM+ AF+Y    GG+  EE YPYT  D    C++     AA+   F  +    ++     V + GP++VAI+A +   Q Y  G+     CS   LDHGV++VGYG
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSR---PEG----NQGCNGGLMDQAFQYVQDNGGIDSEESYPYTAKD-DEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSEDLDHGVLVVGYG 173          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 96/229 (41.92%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLG-LRRKLRLPKDADQAP-----ILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGH---ACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            + +F D+  AEFR T++G LRR    P      P      L  +DLP   DWR+KGAV  VKDQG CGSCW+FST  ++EG N + TG LVSLSEQ+L+DCD         + + GC GGLM++AFEY    GGL+ E  YPY    RG    A     S +   +     V  + ++  A  V N P++VA+ A       Y  GV     C   LDHGV +VGYG A
Sbjct:   91 LNRFGDMDQAEFRATFVGDLRRDT--PSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD--------TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA-RGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE-CGTELDHGVAVVGYGVA 307          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.016e-35
Identity = 96/229 (41.92%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLG-LRRKLRLPKDADQAP-----ILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGH---ACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVVLVGYGSA 709
            + +F D+  AEFR T++G LRR    P      P      L  +DLP   DWR+KGAV  VKDQG CGSCW+FST  ++EG N + TG LVSLSEQ+L+DCD         + + GC GGLM++AFEY    GGL+ E  YPY    RG    A     S +   +     V  + ++  A  V N P++VA+ A       Y  GV     C   LDHGV +VGYG A
Sbjct:   91 LNRFGDMDQAEFRATFVGDLRRDT--PAKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD--------TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAA-RGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTG-DCGTELDHGVAVVGYGVA 307          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 91/239 (38.08%), Postives = 131/239 (54.81%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPA---DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGY 700
            N++ A      +P A + V+ +F+DLTP EF + YL      R  KD  +  +   +  P+     DWR+KGAV PVK+QG CGSCW+FS  G +EG    +   LVSLSEQ LV CD         + D GCNGGLM+ A  + +++  G +  E  YPYT          D+ ++ A +  F  +  DE++IA  + K GP+AVA++A   Q Y GGV      +  L+HGV++VG+
Sbjct:   69 NMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKDHKE-DVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVDATTWQLYFGGV-VSLCLAWSLNHGVLIVGF 296          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 99/243 (40.74%), Postives = 128/243 (52.67%), Query Frame = 2
Query:   26 QKLDPSATHGVTQFSDLTPAEFRRTYLGL-----RRKLRLPKDADQAPILPTNDLPA-DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQ-IAAN-------LVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            QK D      + +F D+T  EFR  Y G      R +  + K+           LPA   DWR KGAV  VKDQG CGSCW+FST  ++EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM+ AFE+ ++  G+  E+ YPY   D            A+++ N  VVS+D  Q + AN        V N P++V+I A     Q Y  GV     C   LDHGV +VGYG+
Sbjct:   75 QKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGLMDYAFEF-IQKNGITTEDSYPYAEQD---------GTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGR-CGTELDHGVAIVGYGA 298          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 92/224 (41.07%), Postives = 119/224 (53.12%), Query Frame = 2
Query:   53 GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVVLVGYG 703
            G+ +F+D++  EFR T LG  +        +         LP   DWRE G V PVK+QG CGSCW+FSTTGALE A   ATGK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  EE YPY G +    CKF    +   V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C      ++H V+ VGYG
Sbjct:  103 GINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDCGFAFN-------NFGCNGGLPSQAFEYIKYNGGLDTEESYPYQGVN--GICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVR--PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYG 315          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 83/180 (46.11%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  173 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVVLVGYG 703
            +P   DW +KG V PVK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVD             + GCNGGLM++AF+Y  + GGL  EE YPY  TD   +C +     AA    F  +   E  +   +   GP++VAI+A +   Q Y  G+     CS + LDHGV++VGYG
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRP-------QGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEATDT--SCNYKPEYSAAKDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYG 171          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 90/240 (37.50%), Postives = 129/240 (53.75%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLG----LRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGY 700
            N++ A      +P A + V+ +F+DLTP EF + YL      R      +D       P+  +  D  WR+KGAV PVK+QG CGSCW+FS  G +EG    +   LVSLSEQ LV CD         + D GCNGGLM+ A  + +++  G +  E  YPYT          D+ ++ A +  F  +  DE++IA  + K GP+AVA++A   Q Y GGV      +  L+HGV++VG+
Sbjct:   69 NMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKNHKEDVHVDDSAPSGVMSVD--WRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVDATTWQLYFGGV-VSLCLAWSLNHGVLIVGF 296          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 96/223 (43.05%), Postives = 120/223 (53.81%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVVLVGYG 703
            + QF+DLT  EF+R  LG  +               T  +P   DWRE G V PVK+QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GC+GGL + AFEY    GGL  EE YPYTG D G  CKF    I   V    N ++ + DE + A  LV+  P++VA   V+  + Y  GV     C      ++H V+ VGYG
Sbjct:  104 LNQFADLTWQEFQRYKLGAAQNCSATLKGSHKITEAT--VPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGTFN-------NFGCHGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGG--CKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVR--PVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYG 313          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.278e-34
Identity = 88/245 (35.92%), Postives = 129/245 (52.65%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---------PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICS-RRLDHGVVLVGYG 703
            NL        +   A +G+ +FSD+    F   + GL   L    D++  P           P+   P  FDWR+   V  VK+QG CGSCW+F+  G +E    +    L+ LSEQQL+DCD           D GC+GGLM+ AF+  ++ GG+  E DYPY G +  +AC+   SK+A  +++     L DE ++   L KNGP+AVAI+ V +  Y  G++   +C+   L+H V+LVGYG
Sbjct:   60 NLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDR---------VDQGCDGGLMHLAFQEIIRIGGVEHEIDYPYQGIE--YACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAIDCVDIIDYRSGIAT--VCNDNGLNHAVLLVGYG 291          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATL1_CHICK2.673e-3648.89Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CYSP2_HORVU5.954e-3641.92Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU1.016e-3541.92Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSP1_LEIPI1.467e-3438.08Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CYSP_HEMSP1.915e-3440.74Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSP2_MAIZE2.502e-3441.07Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATL1_SHEEP2.502e-3446.11Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
LMCPA_LEIME4.267e-3437.50Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
ALEUL_ARATH5.573e-3443.05Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CATV_NPVST7.278e-3435.92Viral cathepsin OS=Spodoptera litura multicapsid n... [more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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