FC875476

Overview
NameFC875476
Unique NameFC875476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:356..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 84/223 (37.67%), Postives = 120/223 (53.81%), Query Frame = 2
Query:   53 GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVVLVGYG 703
            G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVD    C  E+ G  + GCNGG M +AF+Y +   G+  +  YPY   D+   C++D    AA+ + ++ +    + +    V N GP++V ++A +     Y  GV     C++ ++HGV++VGYG
Sbjct:   76 GMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG 286          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 87/239 (36.40%), Postives = 122/239 (51.05%), Query Frame = 2
Query:    5 LRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGV--SCPYICSRRLDHGVVLVGYG 703
            L        L  SA  GV +FSD TP E   +  G    L       +  I+   P   LP  +DWR+   V P+KDQG CGSCW+F   G +E    +   KL+ LSEQQL+DCD           D GCNGGLM+ AF+  L  GG+  E DYPY G+++   C  D  KIA  + + F     DE+++   +   GP+A+A++A+ +  Y  G+   C       L+H V+L+G+G
Sbjct:   97 LNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD---------EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQGSEQ--MCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGILNQCHIY---DLNHAVLLIGWG 321          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 87/227 (38.33%), Postives = 122/227 (53.74%), Query Frame = 2
Query:   53 GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP---ILPTNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINA-----VYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            G+ QFSD++  E R  YL        P++        +  T   P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CKF   K  A V + + +++ DE+ +   +    P++ A        +Y +      SC +    +++H V+ VGYG
Sbjct:   78 GLNQFSDMSFDEIRHKYLWSE-----PQNCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD--DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC-HKTPDKVNHAVLAVGYG 289          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 75/182 (41.21%), Postives = 102/182 (56.04%), Query Frame = 2
Query:  167 NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            +DLP   DWRE GAV PVK+QG CGSCW+FST  A+EG N + TG L+SLSEQQLVDC          + + GC GG MN AF++ +  GG+  EE YPY G D    C    +    S+ ++  V    +Q     V N P++V ++A     Q Y  G+     C+   +H + +VGYG+
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT---------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD--GICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG-SCNISANHALTVVGYGT 170          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 83/236 (35.17%), Postives = 127/236 (53.81%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGYG 703
            NL     + + D SA + + +FSDL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E  +  GG+  E DYPY   +    C+ + +K    V   +  V+L E+++   L   GP+ VAI+A  +  Y  G+   Y  +  L+H V+LVGYG
Sbjct:   55 NLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGLSLPLQKQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDVGCDGGLLHTAYEAVMNMGGIQAENDYPYEANN--GPCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAIDASDIVGYKRGI-IRYCENHGLNHAVLLVGYG 278          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 83/221 (37.56%), Postives = 113/221 (51.13%), Query Frame = 2
Query:   53 GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVVLVGYGS 706
            G+    D+T  E       LR   + P++       P   LP   DWREKG V  VK QG+CGSCW+FS  GALE    L TGKLVSLS Q LVDC            + GCNGG M  AF+Y +   G+  E  YPY   D    C++D    AA+ + +  +    ++     V N GP++V I+A +     Y  GV     C++ ++HGV++VGYG+
Sbjct:   76 GMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSD-PNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMD--GKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGN 287          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 86/225 (38.22%), Postives = 124/225 (55.11%), Query Frame = 2
Query:   56 VTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP---ILPTNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVVLVGYG 703
            + QFSD++ AE +  YL        P++        +  T   P   DWR+KG  V PVK+QG+CGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC  + +       + GC GGL + AFEY L   G+M E+ YPY G D G+ CKF   K    V + + +++ DE+ +   +    P++ A         Y  G+     C +   +++H V+ VGYG
Sbjct:   79 LNQFSDMSFAEIKHKYLWSE-----PQNCSATKSNYLRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFN-------NHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKD-GY-CKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYG 289          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 78/221 (35.29%), Postives = 115/221 (52.04%), Query Frame = 2
Query:   53 GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVVLVGYGS 706
            G+ QF+DLT  EFR TYLG        K +++        LP+  DWR  GAV  +K QG CG CW+FS    +EG N + TG L+SLSEQ+L+DC    +         GCNGG +   F++ +  GG+  EE+YPYT  D    C  D +++   ++  +  V  + +      V   P++VA++A     + Y  G+     C   +DH V +VGYG+
Sbjct:   87 GLNQFADLTDEEFRSTYLGFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD--GECNLDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKHYSSGIFTG-PCGTAIDHAVTIVGYGT 297          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 83/235 (35.32%), Postives = 125/235 (53.19%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVVLVGY 700
            NL     +   D SA + + +FSDL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG+CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E  +  GG+  E DYPY   +    C+ + +K    V   +  V + E+++   L   GPL VAI+A  +  Y  GV   Y  +  L+H V+LVGY
Sbjct:   55 NLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGD--CRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRGV-IRYCANHGLNHAVLLVGY 277          
BLAST of FC875476 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 87/243 (35.80%), Postives = 128/243 (52.67%), Query Frame = 2
Query:    2 NLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP---ILPTNDLPADFDWREKG-AVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVVLVGYG 703
            N R+     + + +    + QFSD++ AE +  +L        P++        +  T   P+  DWR+KG  V PVK+QG+C SCW+FSTTGALE A  +A+GK++SL+EQQLVDC    +       + GC GGL + AFEY L   G+M E+ YPY G D   +C+F+  K  A V N   ++L DE  +   +    P++ A         Y  GV     C +   +++H V+ VGYG
Sbjct:   59 NWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSE-----PQNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFN-------NHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKD--SSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYG 287          
The following BLAST results are available for this feature:
BLAST of FC875476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATS_HUMAN3.994e-3237.67Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATV_NPVHZ5.216e-3236.40Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATH_PIG5.216e-3238.33Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CPGP2_ZINOF8.897e-3241.21Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATV_NPVAP8.897e-3235.17Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATS_BOVIN8.897e-3237.56Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATH_HUMAN8.897e-3238.22Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
ACTN_ACTDE8.897e-3235.29Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CATV_NPVCD1.162e-3135.32Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATH_MOUSE1.162e-3135.80Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31404D03EF CTVClemen1 Citrus clementina cDNA clone C31404D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875476 ID=FC875476; Name=FC875476; organism=Citrus clementina; type=EST; length=711bp
CAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCC
ACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACG
TACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGC
GCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGA
AGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGG
AGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGG
AAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGT
GTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGCAATGGTGGGCTT
ATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGGGCTTATGCGGGA
GGAAGACTATCCTTACACCGGCACTGATCGTGGCCACGCCTGCAAATTCG
ATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGTGTTGTCTCCCTT
GATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGGTCCCCTTGCAGT
GGCCATCAATGCCGTGTACATGCAGACATACATTGGGGGAGTTTCCTGCC
CATACATATGCTCGAGGCGATTGGACCATGGAGTGGTGCTCGTGGGATAC
GGTTCAGCTGG
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