FC875583

Overview
NameFC875583
Unique NameFC875583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_BRAJA (Pyrophosphate-energized proton pump OS=Bradyrhizobium japonicum GN=hppA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.222e-37
Identity = 95/232 (40.95%), Postives = 122/232 (52.59%), Query Frame = 2
Query:   17 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            VLS D G P M +I+ A+R+GA+ + R QY TI     ++ +VIF + ++                        F +GA+ SG AG++GM                     L++A +AG  +              LY  F V+     P S  V D    +V  GFGAS +++FA+LGGGI+TK ADVG DLVGKVE GIPEDDPRNPA IAD VGDNVGDCA   ADLFE
Sbjct:   25 VLSADAGSPRMQEIAAAVREGAQAYLRRQYTTIG----IVGIVIFVLLVYF---------------LGFYVAIGFAIGAILSGAAGFIGMNVSVRANVRTAQAATTSLAGGLELAFKAGAITGMLVAGLALLGVT-LYFGFLVYSLKLAPDSRVVVDA---MVALGFGASLISIFARLGGGIFTKGADVGGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFE 233          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_RHIME (Pyrophosphate-energized proton pump OS=Rhizobium meliloti GN=hppA PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.832e-36
Identity = 97/242 (40.08%), Postives = 130/242 (53.72%), Query Frame = 2
Query:   11 KWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFEACS*NISA 736
            K VL+ D+G   M +I+  IR+GA+ +   QY TI+    ++ +V+F             A+ +  S +A I    FL+GA+ SG AG++GM                     L IA ++G  +               Y      LG + P + +V D    LV  GFGAS +++FA+LGGGI+TK ADVG DLVGKVE GIPEDDPRNPA IAD VGDNVGDCA   ADLFE  + ++ A
Sbjct:   23 KSVLAADQGNARMQEIAGFIREGAQAYLTRQYTTIA----IVGVVVFI------------AAWLLLSGAAAI---GFLIGAVLSGAAGFIGMHVSVRANVRTAQAASVSLASGLDIAFKSGAITGMLVAGLALLGVSVYYLILTAGLGHE-PAAREVIDA---LVALGFGASLISIFARLGGGIFTKGADVGGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVSVVA 241          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA2_METAC (Pyrophosphate-energized proton pump 2 OS=Methanosarcina acetivorans GN=hppA2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.080e-36
Identity = 93/238 (39.08%), Postives = 125/238 (52.52%), Query Frame = 2
Query:    2 YLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLG-VDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            +  K +L +D G   M +I+ AI++GA  +   QY TI+ ++ +L+ +I  +                  +        FL GA+ S  AGY+GM                   +A+ +A R G  +                ++FY+  G VD            L+VG+GFGAS ++LFA++GGGI+TKAADVGADLVGKVE GIPEDDPRN  VIAD VGDNVGDCA  GADLFE
Sbjct:   21 FFAKSILKEDAGNKRMKEIAGAIQEGAMAYLNRQYKTIAVVSIILSFLILFLL-----------------DDGLKIAIGFLAGAISSAAAGYIGMSVSVRANIRTAHAASSGLEKAMSVAFRGGAVTGLAVVGLALLGT----SSFYILYGDVD------------LVVGFGFGASLISLFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNAGVIADNVGDNVGDCAGMGADLFE 225          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA2_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.329e-36
Identity = 92/233 (39.48%), Postives = 121/233 (51.93%), Query Frame = 2
Query:   14 WVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            W+L++D G   M +I+ AI+ GA  +   QY TI+ +  +LA++IF                        +T A F+LGA+ SG  G++GM                    AL +A + G  +              L  + + W       +   T  PLL  G  FG+S +++FA+LGGGI+TK ADVGADLVGKVE  IPEDDPRNPAVIAD VGDNVGDCA   ADLFE
Sbjct:   27 WILAQDAGNARMQEIAGAIQQGAAAYLARQYKTIAIVGAVLAILIFFFL-------------------GGLTAAGFVLGAVLSGACGFIGMNVSVRANVRTAQAATKGIGPALDVAFKGGAITGMLVVGLGL-----LGVSLFFWFLSGGIHADPATLKPLL--GLAFGSSLISIFARLGGGIFTKGADVGADLVGKVEASIPEDDPRNPAVIADNVGDNVGDCAGMAADLFE 233          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_XANAC (Pyrophosphate-energized proton pump OS=Xanthomonas axonopodis pv. citri GN=hppA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.090e-36
Identity = 93/234 (39.74%), Postives = 123/234 (52.56%), Query Frame = 2
Query:   11 KWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            +WV+++  G   M +I+ AI++GA  +   QY TIS    +L  V+  ++L                  +  T   F LGA+ SG+AGY+GM                   +A+ +A R G  +               +A   V  G+  P    +      LVG  FG+S +++FA+LGGGI+TK ADVGADLVGKVE GIPEDDPRNPAVIAD VGDNVGDCA   ADLFE
Sbjct:   26 RWVVAQPSGNARMQEIAAAIQEGARAYLNRQYLTISVAGAVL-FVLVGLFL------------------SWYTAIGFALGAVLSGLAGYIGMNVSVRANVRTAEAARHGIGKAMDVAFRGGAITGMLVVGLGLLGVAGYFA---VLQGMGLPLEQNLH----ALVGLAFGSSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFE 233          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_NITEU (Pyrophosphate-energized proton pump OS=Nitrosomonas europaea GN=hppA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.551e-35
Identity = 95/240 (39.58%), Postives = 126/240 (52.50%), Query Frame = 2
Query:   17 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFEACS*NISA 736
            + ++  G   M +I+ A+++GA  + + QY TI  +  +L ++I                G+  S +  I    F LGA+ SG+AG++GM                   EAL IA R G  +                A      G D   S  ++DL   L+G+ FG S +++FA+LGGGI+TK ADVGADLVGKVE GIPEDDPRNPAVIAD VGDNVGDCA   ADLFE  +  I A
Sbjct:   26 IYAQSAGDSRMQEIAAAVQEGASAYLKRQYLTIGMVGTVLFVII----------------GLALSWNTAI---GFALGAILSGLAGFMGMNVSVQSNVRTAEAARSGLNEALAIAFRGGAVTGMLVVGLGLLGVAGYTALLVS--GADETSS--ISDLIHPLIGFAFGGSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTIIA 242          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_XANCP (Pyrophosphate-energized proton pump OS=Xanthomonas campestris pv. campestris GN=hppA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.025e-35
Identity = 90/234 (38.46%), Postives = 125/234 (53.42%), Query Frame = 2
Query:   11 KWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            +WV+++  G   M +I+ AI++GA  +   QY TIS +A ++  V+  ++L                  +  T   F +GA+ SG+AGY+GM                   +A+ +A R G  +               +A     +G+    ++        LVG  FG+S +++FA+LGGGI+TK ADVGADLVGKVE GIPEDDPRNPAVIAD VGDNVGDCA   ADLFE
Sbjct:   26 RWVVAQPSGNARMQEIAAAIQEGARAYLNRQYLTIS-IAGVVLFVLVGLFL------------------SWYTAIGFAIGAVLSGLAGYIGMNVSVRANVRTAQAARHGISKAMDVAFRGGAITGMLVVGLGLLGVAGYFAILQA-MGLPLEQNLHA------LVGLAFGSSLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFE 233          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_RHILO (Pyrophosphate-energized proton pump OS=Rhizobium loti GN=hppA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.645e-35
Identity = 94/233 (40.34%), Postives = 121/233 (51.93%), Query Frame = 2
Query:   17 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVA-AFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            VL+ D+G   M +IS AIR+GA+ +   QY TI+ +  ++ L+ + +                      IT A  FL+GA+ SG AG++GM                     L IA ++G  +               Y      +G+  P    V D    LV  GFGAS +++FA+LGGGI+TK ADVG DLVGKVE GIPEDDPRNPA IAD VGDNVGDCA   ADLFE
Sbjct:   25 VLASDQGNARMQEISAAIREGAQAYLARQYTTIALVGVVVLLLAWWLL--------------------SITAAIGFLIGAVLSGAAGFIGMHVSVRANVRTAQAASNSLAAGLDIAFKSGAITGMLVAGLALLGVSIYYLILTGPMGLQ-PNDRIVIDS---LVALGFGASLISIFARLGGGIFTKGADVGGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFE 233          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA_PYRAE (Pyrophosphate-energized proton pump OS=Pyrobaculum aerophilum GN=hppA PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.454e-35
Identity = 98/240 (40.83%), Postives = 125/240 (52.08%), Query Frame = 2
Query:    2 YLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLA-LVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXX-EALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFEA 715
            YL  WVL +D G  +M  IS AI  GA  +   QY T++ +  +LA L++  I + R T                +T  AF++GAL S +AGY+GM+                   +AL ++ RAG                  Y  F          S+   D  + LV  GFGAS V LF ++GGGIYTKAAD+GADLVGKVE GIPEDDPRNP VIAD VGDNVGD A   AD++E+
Sbjct:   23 YLAVWVLRQDPGNEKMRFISQAIATGARAYLFRQYRTLAVLLVILAVLILVAIDMPRRTFG--------------LTALAFIVGALGSMLAGYLGMYVTTRSASRVAQAAATGGMGKALLVSWRAGAVMGLSLASIALLLISGFYLVFR---------SVLPDDWAVPLVALGFGASLVTLFMRVGGGIYTKAADLGADLVGKVEAGIPEDDPRNPGVIADNVGDNVGDVAGMAADVYES 239          
BLAST of FC875583 vs. ExPASy Swiss-Prot
Match: HPPA1_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.511e-35
Identity = 92/232 (39.66%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   17 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFE 712
            VL+ D+G   M +I+ A+R+GA+ + + QY TI+    ++ +VIF +  +          GI       +    F +GA+ SG AG++GM                     L++A +AG  +              LY  + +        S  V D    LV  GFGAS +++FA+LGGGI+TK ADVG DLVGKVE GIPEDDPRNPA IAD VGDNVGDCA   ADLFE
Sbjct:   25 VLAADQGNARMQEIAGAVREGAQAYLKRQYMTIA----IVGVVIFALLAY--------FLGI-------LVAIGFAIGAILSGAAGFIGMNVSVRANVRTAQAATTSLAGGLELAFKAGAITGLLVAGLALLGVT-LYFIYLIHFAGLQANSRTVVDA---LVALGFGASLISIFARLGGGIFTKGADVGGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFE 233          
The following BLAST results are available for this feature:
BLAST of FC875583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
HPPA_BRAJA8.222e-3740.95Pyrophosphate-energized proton pump OS=Bradyrhizob... [more]
HPPA_RHIME1.832e-3640.08Pyrophosphate-energized proton pump OS=Rhizobium m... [more]
HPPA2_METAC4.080e-3639.08Pyrophosphate-energized proton pump 2 OS=Methanosa... [more]
HPPA2_RHOPA5.329e-3639.48Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]
HPPA_XANAC9.090e-3639.74Pyrophosphate-energized proton pump OS=Xanthomonas... [more]
HPPA_NITEU1.551e-3539.58Pyrophosphate-energized proton pump OS=Nitrosomona... [more]
HPPA_XANCP2.025e-3538.46Pyrophosphate-energized proton pump OS=Xanthomonas... [more]
HPPA_RHILO2.645e-3540.34Pyrophosphate-energized proton pump OS=Rhizobium l... [more]
HPPA_PYRAE3.454e-3540.83Pyrophosphate-energized proton pump OS=Pyrobaculum... [more]
HPPA1_RHOPA4.511e-3539.66Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E08EF CTVClemen1 Citrus clementina cDNA clone C31405E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875583 ID=FC875583; Name=FC875583; organism=Citrus clementina; type=EST; length=783bp
ATATCTTTGTAAGTGGGTACTCTCAAAGGATGAGGGACCTCCAGAGATGG
CTCAGATATCAGATGCAATACGAGATGGAGCTGAAGGCTTCTTCAGGACC
CAGTATGGGACTATCTCTAAGATGGCATGTTTGCTTGCTTTGGTGATTTT
TTGCATTTACCTGTTTCGCAATACAACCCCTCAACAAGAAGCTTCTGGCA
TTGGGAGGTCAAATTCTGCCTGTATTACTGTTGCTGCATTCCTTTTGGGG
GCTTTATGTTCAGGAATTGCAGGATATGTAGGGATGTGGGTGTCTGTACG
TGCAAATGTTCGAGTGTCCAGTGCTGCAAGACGGTCTGCAAGAGAGGCAT
TGCAGATAGCTGTTCGTGCTGGTGGTTTCTCTGCTATTGTGGTTGTTGGT
ATGGCTGTAATTGGCATAGCCATCCTTTATGCCACATTTTATGTTTGGCT
TGGAGTGGATACACCAGGTTCAATGAAGGTTACTGATTTGCCTCTTCTTC
TTGTGGGGTATGGTTTTGGGGCTTCATTTGTTGCACTGTTTGCCCAGTTG
GGTGGTGGAATATACACAAAAGCTGCTGATGTTGGGGCAGATCTTGTTGG
GAAAGTGGAGCAGGGAATACCTGAAGATGATCCTCGGAATCCTGCTGTCA
TTGCAGATTTGGTTGGAGACAATGTGGGTGATTGTGCTGCACGGGGTGCT
GATCTTTTTGAAGCATGCAGCTGAAATATCAGTGCTTGATACTTGGGGAA
ACATGGGTCACGTGTAACTTGAAATCATCTGGC
back to top