FC875589

Overview
NameFC875589
Unique NameFC875589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11885 contig Ccv1_Contig11885:742..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 1
Query:   25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492
            +FF V  G+E   G   S+ N  EA       E +       G+    +GIITPY+ Q   L    +++  L+S   +++ I +VDAFQG+E+D+IIMSCVR++   G+GF+ D RR+NVALTRA+  + ++GN   L +   W  L+   K R   ++
Sbjct:  726 MFFLVTQGQEEIAGSGTSFLNRTEA----ANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE 880          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 54/161 (33.54%), Postives = 89/161 (55.28%), Query Frame = 1
Query:   19 PYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV--LNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492
            P +F+  + G E       SY N  EA       E +       G+    +G+ITPY+ Q   + +  +N      E  +++ + +VDAFQG+E+D I++SCVR++ N G+GF++D RR+NVALTRA+  L ++GN   L + + W  L+   K + C ++
Sbjct:  730 PMMFWSNL-GNEEISASGTSYLNRTEA----ANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCLVE 885          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_TAKRU (Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes GN=rent1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492
            +FF V  G+E       SY N  EA       E +   L   G     +GIITPY+ Q   L    +F   L+++  + + I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRA+  + ++GN  AL++   W  L+ + K +   ++
Sbjct:  727 MFFYVTQGQEEIASSGTSYLNRTEA----ANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ-VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVE 880          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (Regulator of nonsense transcripts 1 homolog OS=Schizosaccharomyces pombe GN=SPAC16C9.06c PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 75/229 (32.75%), Postives = 108/229 (47.16%), Query Frame = 1
Query:   25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLY----INTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD--MDSLPKEFSVALAAKAPGYGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEKVSRXWN 690
            + F    G+E       S+ N  EA    C  E +  T     +    +GI+TPY  Q   +    +N  N    KDLY    + +VDAFQG+E+D II+SCVR+S H G+GFV D RR+NVALTRA+  + V+GN   L +   W   +   K +   ++  ++SL K FS+ L    P   P + K   N +  RS      +    + S S  P+         WN
Sbjct:  674 LMFYANFGQEELSASGTSFLNRTEAS--TC--EKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQN--NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQK-FSLTL---TPPQKPQKFKRDLNVQ--RSLSPIQNAGSAMLPSFSNLPNLYSSSYLEEWN 890          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii GN=MJ0104 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   40 IHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKA 474
            + G E     S SY N++EA       E + + +K +   K+   +ITPY  Q++ L+  F      E   D+ +NTVD FQG+E + I++S VR  N G  F+ D+RR+NVA+TRA+R L ++GN   L Q   +  +I  +K+
Sbjct:  521 VEGIERKDKESPSYYNIEEA-------EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFE-----EHNIDIEVNTVDGFQGRENEAIVISFVRTKNFG--FLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKS 651          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae GN=NAM7 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   43 HGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYIN----TVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492
            +GRE       S+ N  EA       E +   L   G+    +G+ITPY+ Q   +    +  +N    KDLYI     +VDAFQG+E+D II+SCVRA+    +GF+ D RR+NV LTRA+  L ++GN  +L ++  W  L+   + + C ++
Sbjct:  688 YGREEISANGTSFLNRIEAMN----CERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQ--MNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVE 836          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: YD002_HUMAN (Uncharacterized protein FLJ44066 OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   76 SYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV-LNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477
            S+ NV EA F + L +    +L + G+    +G+IT YK Q+  L H    V  +  + K + ++TVDAFQG E+++II+SCVR     VGF+   +R+NVALTR +R L ++GN   L ++  W  +I   + R
Sbjct:  753 SFHNVAEATFTLKLIQ----SLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ--VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGR 881          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   28 FFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEF--RNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477
            FF    G E       S+ N  EA       E L   L   G+    +G+IT Y+ Q   + +    +  LNS+  +++ I +VDAFQG+E+D II++CVR+++  G+GF++D RR+NVA+TRA+  L ++GNA  L + D W  LI   K++
Sbjct:  721 FFWHCSGSEELSASGTSFLNRTEA----ANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSK 869          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: MOV10_MOUSE (Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 66/227 (29.07%), Postives = 105/227 (46.26%), Query Frame = 1
Query:   25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----CLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPGYGPLQG--KIPHNARGLRSAGQRHRSFDMNMESRSGTP 654
            I F  + G++   G S S+ N +EA       + L       G  +++   VG+I+PY+ Q++    C+    R +   ++ KDL + +V+ FQGQER VI++S VR+S        +  +GF+ + +R NVA+TRA+  L V+GN   L    DW   +   K    Y      P +  +       G   LQG  K+  +  G R    RH++     E   G P
Sbjct:  777 IIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGC-PFPAKLDL-----QQGQDLLQGLSKLSPSTSGPR----RHQNLPQEREGEGGLP 993          
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----CLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCY 486
            I F  + G++   G S S+ N +EA       + L       G  +++   VG+I+PY+ Q++    C+    + +   ++ KDL + +V+ FQGQER VI++S VR+S        +  +GF+ + +R NVA+TRA+  L V+GN   L    DW   +   K    Y
Sbjct:  776 IIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944          
The following BLAST results are available for this feature:
BLAST of FC875589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RENT1_DROME4.078e-1836.48Regulator of nonsense transcripts 1 homolog OS=Dro... [more]
RENT1_NEUCR5.326e-1833.54Regulator of nonsense transcripts 1 homolog OS=Neu... [more]
RENT1_TAKRU2.643e-1737.74Putative regulator of nonsense transcripts 1 OS=Ta... [more]
RENT1_SCHPO5.888e-1732.75Regulator of nonsense transcripts 1 homolog OS=Sch... [more]
Y104_METJA4.985e-1635.86Uncharacterized ATP-dependent helicase MJ0104 OS=M... [more]
NAM7_YEAST6.510e-1635.48ATP-dependent helicase NAM7 OS=Saccharomyces cerev... [more]
YD002_HUMAN8.502e-1637.78Uncharacterized protein FLJ44066 OS=Homo sapiens P... [more]
RENT1_CAEEL1.110e-1536.60Regulator of nonsense transcripts 1 OS=Caenorhabdi... [more]
MOV10_MOUSE1.894e-1529.07Putative helicase MOV-10 OS=Mus musculus GN=Mov10 ... [more]
MOV10_BOVIN1.228e-1430.77Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31405F03EF CTVClemen1 Citrus clementina cDNA clone C31405F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875589 ID=FC875589; Name=FC875589; organism=Citrus clementina; type=EST; length=691bp
AAGGATCCCGTACTTAGGCCTTACATATTTTTTGATGTCATTCATGGGAG
GGAGTCCCATAGAGGTGGATCTGTTTCTTATCAAAACGTTGATGAAGCAA
AATTTGGTGTTTGCTTGTATGAGCATCTTCAGAAAACTCTGAAGTCTATG
GGTTTGGGGAAAGTCACTGTAGGCATCATTACACCATACAAGCTGCAATT
GAAATGCCTTCAACATGAGTTCCGTAATGTTTTAAATTCAGAAGAAGGAA
AAGATTTATATATTAATACTGTTGATGCTTTCCAAGGCCAAGAGCGTGAT
GTAATTATCATGTCTTGCGTGCGAGCATCAAATCATGGGGTTGGCTTTGT
TGCAGATATTCGACGTGTGAATGTTGCTCTTACTCGTGCAAGAAGAGCTC
TTTGGGTTATGGGAAATGCCGGTGCTCTCACACAATCTGATGATTGGGCT
GCATTGATTGCTGATTCGAAAGCAAGGAATTGTTATATGGACATGGACTC
CCTCCCTAAAGAGTTTTCTGTAGCACTAGCAGCAAAGGCACCAGGTTATG
GTCCATTGCAGGGCAAGATTCCCCATAATGCAAGGGGCTTGAGATCTGCT
GGGCAAAGACATCGATCATTCGATATGAATATGGAGTCCAGGTCTGGAAC
ACCATCAGAAGATGATGAGAAGGTATCTAGAAANTGGAATT
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