FC875589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: SEN1_YEAST (Helicase SEN1 OS=Saccharomyces cerevisiae GN=SEN1 PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29 Identity = 63/159 (39.62%), Postives = 101/159 (63.52%), Query Frame = 1 Query: 13 LRPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASN--HGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNC 483 L PY FFD+I GR+ ++SY N++E + + L ++L + + +GII+PY+ Q++ ++ EF K + NT+D FQGQE+++I++SCVRA + VGF+ D RR+NVALTRA+ ++WV+G+ +L +S W LI D+K R+C Sbjct: 1694 LAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRSC 1852
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: YGSA_SCHPO (Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe GN=SPBC29A10.10c PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29 Identity = 75/169 (44.38%), Postives = 113/169 (66.86%), Query Frame = 1 Query: 1 KDPVLRPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGL-GKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDS 501 +DP L Y FF+V HG E+ S S NV+EA F + LYE L + ++ GK+ G++TPY+ Q++ L+ +F+ S K L I+TVD FQGQE+D+II SCVR+S + G+GF+ D+RR+NVALTRA+ +L+++GN+ L Q D + +LI D+K R + D+ + Sbjct: 1618 EDPQLGIYRFFNV-HGTEAF-SNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKI--GVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWRDLSA 1782
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: SEN1_SCHPO (Helicase sen1 OS=Schizosaccharomyces pombe GN=sen1 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22 Identity = 63/163 (38.65%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 4 DPVLRPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLY----INTVDAFQGQERDVIIMSCVRA-SNHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477 +P Y FDV G+E ++S N++E ++ V + + L + +G+ITPY+ QL HE R + GK I TVD FQGQE+D+I SCV++ S HG+GF+ D RR+NVALTRAR +L ++GN L D W +L+ D+ +R Sbjct: 1481 NPKFTQYRLFDV-RGKE-RTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTG-RIGVITPYRSQL----HELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLVDDALSR 1636
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: Y4399_DICDI (Probable helicase DDB_G0274399 OS=Dictyostelium discoideum GN=DDB_G0274399 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21 Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 1 Query: 4 DPVLRPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRA---SNHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALI 459 +P P +F+D+ E+ GG S N E K + L++ K +GII+PY+ Q+ L+ F+N + I+TVD FQG+ER++II SCVRA G+GF++D+RR+NVALTR R +L ++GN AL+ + DW LI Sbjct: 691 NPFFGPLVFYDLSWSTETKPGGG-SVFNEHECKMAMYLFQLFTKVYPDEDFAS-RIGIISPYRQQVLALREIFKNY------PGISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELI 837
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20 Identity = 78/217 (35.94%), Postives = 114/217 (52.53%), Query Frame = 1 Query: 1 KDPVLRPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV--LNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLP--KEFSVALAAKAPGYGPLQGKIPHNARGLRSAGQRHRSFDMNME 636 KDP+ FF G E S+ N EA +C E + +G +GIITPY+ Q + + LN E K + + +VD+FQG+E+D II+SCVR++++ G+GF+ D RR+NVALTRAR L ++GNA L++ W +LI+ K +N ++ SL K+ V L YG QGK+P GQ SF+ + E Sbjct: 812 KDPM-----FFFNCTGSEEISSSGTSFINTTEAS--IC--EKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVE-GSLANLKQSPVILQKPKKLYG--QGKLP-------IPGQNSNSFNYDRE 1009
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_MOUSE (Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19 Identity = 61/159 (38.36%), Postives = 91/159 (57.23%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492 +FF V G+E SY N EA E + L G +GIITPY+ Q L +F L+++ +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR + ++GN AL++ W L++ K + ++ Sbjct: 752 MFFYVTQGQEEIASSGTSYLNRTEA----ANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVE 906
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: SETX_MOUSE (Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19 Identity = 55/156 (35.26%), Postives = 94/156 (60.26%), Query Frame = 1 Query: 16 RPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477 +PY+ FDV G S R + SY NV E K + + + +++ K + + GIIT YK Q +Q + + + + ++TVDAFQG+++D II++CVRAS +GF+A ++R+NV +TRA+ +L+++G+ L ++ W LI D++ R Sbjct: 2271 QPYLVFDV--GDGSERRDNDSYINVQEIKLVMEIIKLIKEKRKDISFRNI--GIITHYKAQKTMIQKDLEKEFDKKGPAE--VDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKR 2420
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_HUMAN (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19 Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALI 459 +FF V G+E SY N EA E + L G +GIITPY+ Q L +F L+++ +++ I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRAR + ++GN AL++ W L+ Sbjct: 757 MFFYVTQGQEEIASSGTSYLNRTEA----ANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL 900
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18 Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 7 PVLRPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCL-QHEFRN-VLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492 PV +FF V G+E SY N EA E L G+ +G+ITPY+ Q + + RN L + K++ + +VD+FQG+E+D II+SCVR++ H G+GF+ D RR+NVALTRAR + ++GN L++ W L+ K C ++ Sbjct: 760 PVPNRPMFFYVQLGQEEISASGTSYLNRTEA----ANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVE 920
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: SETX_HUMAN (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18 Identity = 53/156 (33.97%), Postives = 94/156 (60.26%), Query Frame = 1 Query: 16 RPYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASN--HGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477 +PY+ FDV G S R + SY NV E K + + + ++ K + + GIIT YK Q +Q + + + + ++TVDAFQG+++D +I++CVRA++ +GF+A ++R+NV +TRA+ +L+++G+ L ++ W LI D++ R Sbjct: 2295 QPYLVFDV--GDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDVSFRNI--GIITHYKAQKTMIQKDLDKEFDRKGPAE--VDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKR 2444 The following BLAST results are available for this feature:
BLAST of FC875589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875589 ID=FC875589; Name=FC875589; organism=Citrus clementina; type=EST; length=691bpback to top |