FC875591

Overview
NameFC875591
Unique NameFC875591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10272 contig Ccv1_Contig10272:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875591 vs. ExPASy Swiss-Prot
Match: OSTC_HUMAN (Oligosaccharyltransferase complex subunit OSTC OS=Homo sapiens GN=OSTC PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = 3 
Query:  177 PYSIIRPPRLRLKLPSFT-LPSPMTVFALVLLTYFMVVSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNGQYIIEGLSSXXXXXXXXXXXXXXDLALDKNRAKSVKVSYASAGISSIVIAYIMSMLFIRIKIPGYL 596
            P+ ++  P L+LK P +  +PS MTV+ALV+++YF++  G +YDVIVEPP +GS  D   G  RPV FL  RVNGQYI+EGL+S              D +   N  K  +      G   +++++ M+ +F+R+K+PGYL
Sbjct:    8 PFLVLECPNLKLKKPPWLHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTD-EHGHQRPVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLPGYL 147
The following BLAST results are available for this feature:
BLAST of FC875591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
OSTC_HUMAN6.130e-2340.43Oligosaccharyltransferase complex subunit OSTC OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F05EF CTVClemen1 Citrus clementina cDNA clone C31405F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875591 ID=FC875591; Name=FC875591; organism=Citrus clementina; type=EST; length=738bp
GGTTTTTATTATTTTTCTCTCCACGCCTTAGTCGTTTCGACTCTGATCCA
ATTCAGGACGATTCACATACTTCTGCAAAAATGGCTCCGAAAGCAGAAGC
AGCACAAACCCTCGCATCACAATCCGACGCATCGCAGTCGTCAATTGACC
CACTGTTCCACATCCTCAAAATCTTCCCTTACTCGATCATCCGCCCGCCG
CGTCTCCGCCTGAAGCTGCCGTCATTCACGCTCCCATCCCCAATGACCGT
CTTCGCCCTCGTCCTCCTAACCTACTTTATGGTCGTGTCGGGCTTCGTCT
ACGACGTCATCGTTGAGCCTCCTGGCATCGGGTCCACGCAGGACCCCGCC
ACCGGTTCCGTACGCCCCGTCGTCTTCCTACCCGGCCGCGTCAACGGGCA
GTACATCATCGAGGGACTCTCTTCTGGGTTCATGTTCGTGCTCGGCGGGA
TGGGCTTCGTGCTTTTGGATCTCGCTCTTGATAAGAATAGGGCTAAGAGT
GTTAAGGTCTCTTATGCCTCTGCTGGGATCTCTTCCATTGTCATTGCTTA
TATTATGAGTATGCTCTTTATTCGCATTAAGATCCCTGGTTATCTTAGGT
GAATTTTTATTTTCTTTTTTAATGCTGTTCGTTTACTTAGTTTTGATAAG
AGTTTAATTGGGTTGTGGATTTTTTTATGGTATTTGATCAGATTGTGNTA
TACATTTGCAATGAATGAAACTGCTATGAATTCCAGTG
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