FC875594

Overview
NameFC875594
Unique NameFC875594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:5..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_VARPS (Adenosylhomocysteinase OS=Variovorax paradoxus (strain S110) GN=ahcY PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.526e-41
Identity = 96/177 (54.24%), Postives = 115/177 (64.97%), Query Frame = 2
Query:  170 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGP----GGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGLKAD 688
            + DLS A +GR EI++AE EMPGLMA R EF  +QP KGA+ITGSLHMTIQTAVLIETL ALGA VRW SCNIFSTQDH               KGE+L++YW  T    D+GP    G GP++I+DDGGDATLL+H G +AE   +  G L  P S    E +I+   I+  L  D
Sbjct:   17 IADLSLAAWGRKEIKIAETEMPGLMAIREEFSKAQPLKGARITGSLHMTIQTAVLIETLQALGATVRWASCNIFSTQDHAAAAIAAAGTPVFAIKGESLKDYWDYTHAIFDFGPKGSQGEGPNMILDDGGDATLLMHLGQRAE---KDLGVLSKPTS---EEERILYAAIKAKLAVD 187          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_BORPE (Adenosylhomocysteinase OS=Bordetella pertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.602e-41
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  161 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 589
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_BORPA (Adenosylhomocysteinase OS=Bordetella parapertussis GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.602e-41
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  161 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 589
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_BORBR (Adenosylhomocysteinase OS=Bordetella bronchiseptica GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.602e-41
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  161 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 589
            ++ V D++ A +GR E+ +AE EMPGLMA R E+  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T K  +W  G   ++I+DDGGDATLL+H G +AE+
Sbjct:   11 DYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQ 153          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_AGRT5 (Adenosylhomocysteinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.602e-41
Identity = 82/143 (57.34%), Postives = 101/143 (70.63%), Query Frame = 2
Query:  158 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 586
            +++ V D++ A FGR E+++AE EMPGLM+CR EFG S+P KGA+ITGSLHMTIQT VLIETL  LGAE+RW SCNIFSTQDH               KGE+L EYW  T+K   W  GG  ++I+DDGGDAT+ I  G +AE
Sbjct:    5 KDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCNIFSTQDHAAAAIAAAGIPVFAVKGESLTEYWEYTDKIFQWTDGGLSNMILDDGGDATMYILLGARAE 147          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_HALHL (Adenosylhomocysteinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 80/140 (57.14%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  152 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 571
            S +++KV D+S AD+GR EI++AE EMPGLM  R EF   +P KGA+I G LHMTIQTAVLIETL  LGAEVRW SCNIFSTQD               WKGET +EYWWC E+ ++   G  P++++DDGGD T +IHE
Sbjct:    2 SNQDYKVADISLADWGRKEIKIAESEMPGLMETRREFAAQKPLKGARIAGCLHMTIQTAVLIETLQELGAEVRWSSCNIFSTQDQAAAAVAANGTPVFAWKGETEEEYWWCIEQTINGPDGWKPNMLLDDGGDLTAVIHE 141          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 81/149 (54.36%), Postives = 103/149 (69.13%), Query Frame = 2
Query:  125 MALSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 571
            M  S+  +A   ++KV+D+  AD+GR EI +AE EMPGLMA R E+G S+P  GA+I G LHMTIQTAVLIETLTALGA VRW SCNIFSTQDH              WKG + +E+WWC E+ +    G  P++I+DDGGD T+L+H+
Sbjct:    1 MESSMPDTAVAEDYKVRDIGLADWGRKEIRMAEDEMPGLMALREEYGNSKPLAGARIAGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQDHAAAGIAAAGIPVFAWKGLSEEEFWWCIEQTVRGPDGWTPNMILDDGGDLTVLMHD 149          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_CAEEL (Adenosylhomocysteinase OS=Caenorhabditis elegans GN=ahcy-1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 83/135 (61.48%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  164 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIH 568
            +KV D+  ADFGR EI LAE EMPGLMA R+++GPSQP KGA+I G LHMTIQTAVLIETLTALGAEV+W SCNIFSTQDH              WKGET +EY WC E+ + +  G   ++I+DDGGD T L+H
Sbjct:    8 YKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNMILDDGGDLTNLVH 142          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_XANCP (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.797e-41
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 2
Query:  134 SVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW----GPGGGPDLIVDDGGDATLLIHEGVKAE 586
            +V K+    ++K+ D+S AD+GR E+++AE EMPGLM+ R +   ++P K  +ITGSLHMTIQTAVLIETL  +GA VRW SCNIFSTQDH              WKGETL+EYW CT  AL +    G   GP+L+VDDGGD TLLIH+G + E
Sbjct:    3 AVAKTVPHTDYKIADISLADWGRKELDIAEHEMPGLMSIRRKHAQTKPLKDVRITGSLHMTIQTAVLIETLKDIGANVRWASCNIFSTQDHAAAAIAATGTPVFAWKGETLEEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLIHKGYELE 157          
BLAST of FC875594 vs. ExPASy Swiss-Prot
Match: SAHH_XANC8 (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ahcY PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.797e-41
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 2
Query:  134 SVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW----GPGGGPDLIVDDGGDATLLIHEGVKAE 586
            +V K+    ++K+ D+S AD+GR E+++AE EMPGLM+ R +   ++P K  +ITGSLHMTIQTAVLIETL  +GA VRW SCNIFSTQDH              WKGETL+EYW CT  AL +    G   GP+L+VDDGGD TLLIH+G + E
Sbjct:    3 AVAKTVPHTDYKIADISLADWGRKELDIAEHEMPGLMSIRRKHAQTKPLKDVRITGSLHMTIQTAVLIETLKDIGANVRWASCNIFSTQDHAAAAIAATGTPVFAWKGETLEEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLIHKGYELE 157          
The following BLAST results are available for this feature:
BLAST of FC875594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_VARPS1.526e-4154.24Adenosylhomocysteinase OS=Variovorax paradoxus (st... [more]
SAHH_BORPE2.602e-4158.04Adenosylhomocysteinase OS=Bordetella pertussis GN=... [more]
SAHH_BORPA2.602e-4158.04Adenosylhomocysteinase OS=Bordetella parapertussis... [more]
SAHH_BORBR2.602e-4158.04Adenosylhomocysteinase OS=Bordetella bronchiseptic... [more]
SAHH_AGRT52.602e-4157.34Adenosylhomocysteinase OS=Agrobacterium tumefacien... [more]
SAHH_HALHL3.399e-4157.14Adenosylhomocysteinase OS=Halorhodospira halophila... [more]
SAHH_GRABC4.439e-4154.36Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]
SAHH_CAEEL4.439e-4161.48Adenosylhomocysteinase OS=Caenorhabditis elegans G... [more]
SAHH_XANCP5.797e-4154.19Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]
SAHH_XANC85.797e-4154.19Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405F08EF CTVClemen1 Citrus clementina cDNA clone C31405F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875594 ID=FC875594; Name=FC875594; organism=Citrus clementina; type=EST; length=688bp
GCTCACCCCACTCTATCTCTCTCGCTTGTACAATCATTCACTTTGTTTGG
TTGGTTTCCAAAGAGAGAGTAGAGTGCCCTCTCTTCCTTCTTCCTTTTAG
ATCTATCAATTCTATTAATAAGCCATGGCTTTGTCCGTCCAGAAATCCGC
TAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGGCC
GCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTTGC
CGCGCCGAGTTCGGCCCTTCACAGCCCTTCAAAGGAGCCAAGATCACCGG
TTCACTCCACATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCACCG
CTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCCAA
GACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTGCCTG
GAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCCCTGG
ACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGGTGAC
GCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTACGAGAA
GACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGTTTCAGA
TTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGAT
back to top