FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ACIF2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.525e-24
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            H +G+PR+G KRELK ALESFW  +   ++LQ  +A LR   W+     G+  +P   FS YD +LD +  LGA+PPRY + GG++G D +F+MARG+A+ PA
Sbjct:    5 HSLGFPRIGHKRELKKALESFWSREIDEQELQSRAAQLRDRHWRIQQTCGMDLVPVGDFSLYDHMLDMSCTLGAIPPRYGFAGGQVGLDTFFAMARGSATQPA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.910e-24
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +GYPR+G  RELK A+E +W G  + ++L+  +  LR S W    E G+  +PSN FSYYDQVLD  AM+GAVP R+ W+G E+  D YF+MARG
Sbjct:    7 LGYPRIGAHRELKRAVEGYWKGDLTKDELRDSAQALRESHWATQQELGLDVVPSNDFSYYDQVLDACAMVGAVPERFPWDGTEVDLDTYFAMARG 101          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PELCD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.719e-24
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            M +H +G+PRMG  RELK  LES+W G    E L     +LR   W+   +AGI  +P   FSYYD +LD  AMLGAVPPR+ W G  +  D YF MARG++
Sbjct:    1 MLTHTLGFPRMGAHRELKKNLESYWKGAIGQEKLMASGRELRLRHWRLQQQAGIDLVPVGDFSYYDHMLDMVAMLGAVPPRFGWQGESVDLDTYFYMARGSS 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_NITOC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.246e-23
Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            + +H +G+PR+G +RELK+ALES+W  +   ++L +V+ +LR+  WKQ  EAG+  +P   FS+YDQVLD +A+LG VPPR+     E+  D YF MARG A
Sbjct:    2 IVAHNLGFPRIGGQRELKWALESYWKEQLGQQELIQVTRELRALHWKQQQEAGLDLVPVGDFSWYDQVLDMSALLGVVPPRFGEIQDEVDLDTYFCMARGRA 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRGG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.933e-23
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            + GYPR GP RELK A+E +W G+  A+ L++ +A+LR   W+Q++EAG+  +P+  FSYYD VLDT+ M+GAVP R+  +      D YF+MARG   V
Sbjct:   14 VYGYPRQGPHRELKKAIEGYWKGRVDADALRETAAELRRGTWQQLAEAGVHEVPTGDFSYYDHVLDTSVMVGAVPERHRASVEADALDGYFAMARGTQDV 113          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_NITWN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=metE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.933e-23
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +G PR+GP+RELK ALES+W GKS    L + +A LR++ W +    G+  IPSN F++YD VLDT+ M+GA+P  Y W  G +    YF+MARG
Sbjct:    4 LGTPRIGPRRELKTALESYWSGKSDESALLEAAAGLRAANWARQKSLGVTVIPSNDFTFYDHVLDTSVMVGAIPDIYGWKSGPVPLATYFAMARG 98          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_RHOSR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodococcus sp. (strain RHA1) GN=metE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.901e-22
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            ++G PR+GP RELK A+ES+W G+  AE L  ++ DLR   W  + +AG+  +P NTFSYYD VLDT AMLGA+P R    G E   D YF+ ARGN +V
Sbjct:    9 VLGSPRIGPNRELKKAVESYWAGRLDAEGLDALARDLRRRTWTSLRDAGLDSVPVNTFSYYDHVLDTAAMLGALPDRV--AGIESDLDRYFAAARGNDTV 106          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.901e-22
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G PR+GP+RELK ALES+W GK S + L + +  LR++ W +    G+  IPSN FS YDQVLDT+ M+GA+P  Y  NG  +    YF+MARG+
Sbjct:   11 LGTPRIGPRRELKLALESYWAGKISEQQLHEDAFGLRAANWARQKSLGVTIIPSNDFSLYDQVLDTSVMVGAIPEIYAANGESVSLQTYFAMARGS 106          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MESSB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=metE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.243e-22
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G PR+G +RELKFALE++W G+SS  +L   +A +R+  W     AG   IPSN F+ YD VLD    LGA+P  Y W GG +  D YF+MARG+
Sbjct:    9 LGVPRIGRRRELKFALEAYWGGESSEGELLAAAAKIRAENWSLQKAAGASIIPSNDFTLYDHVLDMAVTLGAIPEIYGWAGGAVPLDTYFAMARGS 104          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.436e-22
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            H +GYPR+G +RELKFALESFW G SS +DL+   + LR+  W    +AG+ ++    F++YDQV  T A+LGAVP RY ++  ++     F +ARGNA
Sbjct:    5 HTLGYPRIGAQRELKFALESFWKGASSEDDLRATGSALRARHWAAQRDAGLDFVTVGDFAWYDQVQQTAALLGAVPTRYGFDPAQLTLAQSFVLARGNA 103          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_ACIF24.525e-2447.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD5.910e-2451.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PELCD7.719e-2449.025-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITOC2.246e-2348.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRGG2.933e-2348.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITWN2.933e-2349.475-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOSR1.901e-2252.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA1.901e-2250.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESSB3.243e-2248.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ9.436e-2247.475-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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