FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella choleraesuis GN=metE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG VP R+  N G +  D  F + RG A
Sbjct:    5 THTLGFPRVGLRRELKKAQESYWAGNSTREALLAVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSMDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SACD2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            H +G+PR+G KRELKFA E++W G+     L K +  LR++ W+   +AG++++P   FSYYD VLDT+ ++G +P R   + G+   D YF +ARG A   A
Sbjct:    5 HNLGFPRIGAKRELKFACEAYWRGEIDQTQLDKTAHTLRANHWQTQLDAGVEWLPVGDFSYYDHVLDTSFLVGNIPVRAQAD-GQSKLDTYFKVARGTAKEAA 106
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SERP5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Serratia proteamaculans (strain 568) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W+Q  +AG+  +P   F++YD VL T+ +LG VP R+    G I  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTQEELLAVGRELRARHWQQQQQAGVDLVPVGDFAWYDHVLTTSLLLGNVPARHQNADGTIDLDTLFRLGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALTY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhimurium GN=metE PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G ++ E L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG VP R+  N G +  D  F + RG A
Sbjct:    5 THTLGFPRVGLRRELKKAQESYWAGNTTREALLAVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALTI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhi GN=metE PE=3 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G ++ E L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG VP R+  N G +  D  F + RG A
Sbjct:    5 THTLGFPRVGLRRELKKAQESYWAGNTTREALLAVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALHS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella heidelberg (strain SL476) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G ++ E L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG VP R+  N G +  D  F + RG A
Sbjct:    5 THTLGFPRVGLRRELKKAQESYWAGNTTREALLAVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SALDC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella dublin (strain CT_02021853) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G ++ E L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG VP R+  N G +  D  F + RG A
Sbjct:    5 THTLGFPRVGLRRELKKAQESYWAGNTTREALLTVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LISMF (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   40 KMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            K  S  +GYPR+G KRE K ALE FW+G  S ++L   +  LR    K+  + GI  IP   FS+YDQVLDT+   G +P R+  +GG++  + YF +ARG
Sbjct:    3 KAISSNLGYPRLGEKREWKRALEKFWNGTISEKELLAETKILRLHALKKQQDKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIARG 103
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LISMC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   40 KMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            K  S  +GYPR+G KRE K ALE FW+G  S ++L   +  LR    K+  + GI  IP   FS+YDQVLDT+   G +P R+  +GG++  + YF +ARG
Sbjct:    3 KAISSNLGYPRLGEKREWKRALEKFWNGTISEKELLAETKILRLHALKKQQDKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIARG 103
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ENTS8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=metE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W GKS+ E+L  V  +LR+  W+Q   AGI  +P   F++YD VL T+ +LG VP R+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGKSTREELLAVGRELRARHWEQQKAAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNADGTVDIDTLFRIGRGRA 104
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_SALCH3.356e-1944.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SACD23.356e-1942.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SERP54.383e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALTY4.383e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALTI4.383e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALHS4.383e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALDC4.383e-1943.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LISMF4.383e-1944.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LISMC4.383e-1944.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ENTS84.383e-1944.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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