FC876163

Overview
NameFC876163
Unique NameFC876163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876163 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 72/210 (34.29%), Postives = 105/210 (50.00%), Query Frame = 1
Query:  109 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR--GKYYGRGPIQLTWKLHYLRCGEGLGRGEDLLKHPDLLA 708
            +A NCG    C  G CCS++G+CG T  +C  GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++W  +Y   G+ +  G D L+ PD +A
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNI--GFDGLRDPDKVA 214          
BLAST of FC876163 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query:  283 LGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWKLHYLRCGEGLGRGEDLLKHPDLL 705
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+++  +Y   G+ +  G DLL++PDL+
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNYNYGAAGKAI--GVDLLRNPDLV 111          
BLAST of FC876163 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 72/201 (35.82%), Postives = 96/201 (47.76%), Query Frame = 1
Query:  109 SAGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLTWKLHYLRCG-----EGLGRGE 678
            SA NCG    C  G CCS++G+CG   D+C  GCQ    Q  C    P      +      I++ +    +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+W  +Y   G     +GLG  E
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPE 196          
BLAST of FC876163 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  106 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 402
            GSA  CG      +CPGG CCS +GWCG T+D+C DGCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of FC876163 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 77/216 (35.65%), Postives = 98/216 (45.37%), Query Frame = 1
Query:  112 AGNCGSGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN----YPCRG--KYYGRGPIQLTWKLHYLRCGEGLGRGEDLLKHPDLLA 708
            A NCG    C    CCS FG+CG    +C  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QL+W  +Y   G+ +  G D L +P+ +A
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAI--GFDGLGNPEKVA 217          
BLAST of FC876163 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 67/189 (35.45%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  154 CCSRFGWCGLTIDHCCDGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLTWKLHYLRCGEGLGRGEDLLKHPDLL 705
            CCS+ G+CG + D+C  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+W  +Y+  G+ L    D L  PD++
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKEL--HFDGLNDPDIV 174          
The following BLAST results are available for this feature:
BLAST of FC876163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ2.114e-2534.29Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_AVESA3.605e-2544.68Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI4_PHAVU3.986e-2435.82Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIC_POPTR8.880e-2454.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIP_BETVU2.584e-2335.65Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA1.675e-2235.45Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32001A08EF DevOvary1 Citrus clementina cDNA clone C32001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876163 ID=FC876163; Name=FC876163; organism=Citrus clementina; type=EST; length=713bp
CTCGCCGGGGAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAAT
GAGGCTTATTGCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTAC
TAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGG
GAGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACTGTTG
TGACGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATC
CCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCA
AGGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCC
TGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTT
TTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATT
GCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGA
TGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTG
GCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAG
TACTATGGCCGAGGTCCAATTCAACTCACTTGGAAATTACATTACTTACG
GTGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAAACATCCAGACC
TTCTTGCTNACTA
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