FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +V INGFGRIGR                   ND   D +  A++ KYDS  G  K      DD+++ +NGK IK  S R+P  +PW ++ +D ++ES+GVFT+
Sbjct:    3 RVAINGFGRIGRNFARCWLGRENSNIELVAVNDTS-DPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTS 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  364 TKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            T+V INGFGRIGR  L                ND   D +  A++ +YDS  G     I+  D++++ +NGK IK  S R+P  +PW ++ VD V+E++GVF T
Sbjct:    2 TRVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTS-DPRTNAHLLRYDSMLGKLDADISA-DENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +V INGFGRIGR  +                ND     K  +++ KYDS  G F   ++  +D T+ +NGK IK+ S R+P ++PW +  +D VVE++GVF
Sbjct:   80 RVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTS-GVKTASHLLKYDSILGTFDADVSAGED-TISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVF 178          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +V INGFGRIGR                   ND   D +  A++ KYDS  G  K      DD+++ +NGK IK  S R+P  +PW ++ +D ++E++GVF +
Sbjct:    3 RVAINGFGRIGRNFARCWLGRENTNIELVAVNDTS-DPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFVS 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            ++ INGFGRIGR  L                 +   DA   A++F+YDS HG F G +   D  +L + G  I V + R+PAE+PW   GVD V+E +G+FT+
Sbjct:    4 RLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGHFPGEVEH-DAESLRVMGDRIAVSAIRNPAELPWKSLGVDIVLECTGLFTS 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            ++ INGFGRIGRL                 +  +    + Y+FKYDSTHG F        D  L +  + I+  +++D  ++PW D  VD VVES+G+F
Sbjct:    2 RIVINGFGRIGRLVLRQILKRNAPIEVVAINDLVSGDLLTYLFKYDSTHGSFASQATF-SDGCLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLF 99          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KV INGFGRIGRL                 +  +    + Y+FK+DSTHG F   +    D  + +  + I+  S+R+   +PW D GVD V+E +G+FT
Sbjct:    2 KVVINGFGRIGRLVLRQILKRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVRCEADHLI-VGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFT 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            +V INGFGRIGR  L                 +   DA  +A++ KYDS+HG F   I V +D  L++    I++F   D A++PWG+ G+D V++ SGV+
Sbjct:    4 RVAINGFGRIGRNVLRALYESGKRAEISVVAINELADATGIAHLLKYDSSHGRFAWDIRVNND-LLQVGDDAIRLFHHADIADLPWGELGIDVVLDCSGVY 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KV INGFGRIGRL                  +     +  A++FK DS HG + GT+   + + + I+GK I V ++RDPA +P    GVD V+E +G+FT   +
Sbjct:    4 KVAINGFGRIGRLAARAILSRPDSGLELVTINDLGSVEGNAFLFKRDSAHGTYPGTVTT-EGNDMVIDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTEK 107          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P2_ANAVT3.343e-1237.86Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_SYNY37.448e-1238.46Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_CHOCR2.167e-1137.62Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_ANASP2.830e-1135.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_PSEAE4.828e-1138.83Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_CHLMU4.828e-1135.35Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_CHLPN6.305e-1136.00Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
E4PD_PROMH6.305e-1137.62D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
G3P_ZYMMO8.235e-1137.14Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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