FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDP  I WG+ G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA-ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEK 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 57/101 (56.44%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            VGINGFGRIGR+                NDPFID  YM YMFKYDS HG FKG+I    D  L + GK I +F+++DPA IPWG  G DYVVES+GVFTT+
Sbjct:    4 VGINGFGRIGRIVFRNALEVGGVDVVAINDPFIDLDYMVYMFKYDSVHGRFKGSIEA-KDGKLIVEGKPIHIFAEKDPANIPWGSVGADYVVESTGVFTTI 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 57/107 (53.27%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQL 687
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F GT+   D +TL +NGK IK +++RDPA+IPW + G +YVVES+GVFT   +  L
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRFNGTVEF-DGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASL 110          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G I   + + L INGK +K +++RDPA IPW + G DYVVES+GVFTT
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQ-EGNDLVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTT 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F+GTI   D+  + +NGK I+ F++RDPA IPWG  G  Y+VES+GVFTT  +
Sbjct:    5 KVGINGFGRIGRIVFRNAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHGRFQGTIETYDEGLI-VNGKKIRFFAERDPAAIPWGSAGAAYIVESTGVFTTTEK 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            +GINGFGRIGR+                NDPFID +YM YM KYDSTHGVF G I+   D  L +NGK I VF+++DP+ IPWG  G  YVVES+GVFTT+
Sbjct:    6 IGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVFNGDIST-KDGKLIVNGKSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTI 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.019e-25
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            K GINGFGRIGR+                NDPFID +YM YMFKYDS HG FKG++    D  L + GK I VF+++DPA IPWG  G +Y+VES+GVFTT  +
Sbjct:    4 KAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFKGSVEA-KDGKLYVEGKPIHVFAEKDPANIPWGSVGAEYIVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 59/106 (55.66%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            K+GINGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +    D  L I+G  IKVF +RDPA IPWG  GVDYV+ES+GVFT +   Q
Sbjct:    4 KIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASGDD-LVIDGHKIKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQ 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 56/100 (56.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            +VGINGFGRIGRL                NDPFID +YMAYMFK+DSTHG + G++    D  L +NGK I ++  RDPAEIPW + G DYVVES+GVFT
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYAGSVET-KDGKLIVNGKSITIYGHRDPAEIPWAEAGADYVVESTGVFT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            T+VGINGFGRIGR+                NDPFI  +YM YMFKYDS HG F+GT+    D  L +NGK I VFS+RDPA+IPWG     YVVES+GVFT++
Sbjct:    3 TQVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQGTVEA-KDGKLVVNGKEISVFSERDPAQIPWGSVEAAYVVESTGVFTSI 104          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_MOUSE6.939e-2653.85Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_PLESA1.184e-2556.44Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_MONAN1.184e-2553.27Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_COLGL1.184e-2556.44Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_ASPOR1.546e-2553.85Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_USTMA2.019e-2555.45Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_PHACH2.019e-2552.88Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_CANAL2.637e-2555.66Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3PC_GRAVE2.637e-2556.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_RHIRA2.637e-2555.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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