FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG F G I  V+D  L +N + +K ++KR+P EIPW + G +Y+VES+GVFTT  +
Sbjct:    5 KVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG-LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEK 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQL 687
            KVGINGFGRIGR+                NDPFI   YM YMFKYD+ HG +KGT+ V  D  L ++G  I VF++++PA+I WG  G DY+VES+GVFTT+ +  L
Sbjct:    4 KVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYKGTVEV-KDGKLVVDGHAITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASL 109          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +   ++  L+++GK ++ + +RDPA IPW + G DYV+ES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSENG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I V D + L +NGK I+   ++DPA IPW + G  YVVES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 56/103 (54.37%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTL 672
            +K+GINGFGRIGRL                NDPFID  YM Y+FKYDSTHG FKGT+   D   L +NGK I VF +RDP  I W   G +Y+VES+GVFTT+
Sbjct:    2 SKIGINGFGRIGRLVLRAALDKGAEVVAV-NDPFIDVNYMVYLFKYDSTHGRFKGTV-AADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTI 102          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 55/104 (52.88%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I V D + L +NGK ++   ++DPA IPW + G  YVVES+GVFTT  +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG+++      +  NGK    I V + +DPAEIPWG  G +YVVES+GVFTT
Sbjct:    5 KVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTT 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +YVVES+GVFTT+ +
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEK 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGRL                NDPFID  YMAYM KYDSTHG + G +++  D  L+++G  I VF+ RDPAEIPW     DY+VE++GVFT
Sbjct:    5 KVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYAGDVSI-KDGKLQVDGNSITVFAHRDPAEIPWATAAADYIVEATGVFT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 56/105 (53.33%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT++  +   L +NG+ I VFS+RDPA I W   G +YVVES+GVFTT  +
Sbjct:    2 SKIGINGFGRIGRLVLRAAVDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTVSA-EGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTTEK 104          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_ERYGR2.232e-2450.96Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_SCHCO2.915e-2450.47Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_COCP72.915e-2450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCHE2.915e-2453.85Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_GLOMM3.808e-2454.37Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_CURLU3.808e-2452.88Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_BRUMA3.808e-2454.81Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P2_DROPS3.808e-2453.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3PC_CHOCR4.973e-2454.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DROHY6.495e-2453.33Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
back to top