FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 55/104 (52.88%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  358 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            G  K+GINGFGRIGRL                NDPFI  +YM YMFKYD+ HG +K + I + DD TL    K + VF  R+P EIPWG+ G DYVVES+GVFT
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHG+FKG +   +D  L ++GK I VF++  P  IPW   G +Y+VES+GVFTT+ +
Sbjct:    1 SKIGINGFGRIGRLVLRAALEMGAQVVAV-NDPFIALEYMVYMFKYDSTHGMFKGEVKA-EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEK 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 55/103 (53.40%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG ++      +  NGK    I V + +DPAEIPWG  G +YVVES+GVFT
Sbjct:    5 KIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHGRFKGHVSAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVESTGVFT 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            VGINGFGRIGR+                NDPFI+ +YM YMFKYDS HG FKGT+    D  L I GK + V+ +++P++I WG  G DYVVES+GVFTT+ + +
Sbjct:    4 VGINGFGRIGRIVFRNALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFKGTVE-AKDGKLWIQGKPVIVYGEKNPSDIKWGAAGRDYVVESTGVFTTVEKAE 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 55/101 (54.46%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   I V D+ TL    K + VF  R+P EIPWG  G DYVVES+GVFT
Sbjct:    5 KIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 57/107 (53.27%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN-GKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  +  N GK    IKV++ +DPAEI WG  G DYVVES+GVFTT+ +
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVKHEGDYLIVANEGKSQHKIKVYNSKDPAEIQWGAAGADYVVESTGVFTTIEK 112          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN-GKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  L    GK    IKV++ RDPAEI WG  G DYVVES+GVFTT+ +
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKSQHKIKVYNSRDPAEIQWGSAGADYVVESTGVFTTIEK 112          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGR+                NDPFI  +YM YMFKYDS HG FKGT+       L ++GK I VF ++D   IPW   G +Y+VES+GVFTT+ +
Sbjct:    4 KVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFKGTVET-KGGKLIVDGKEISVFGEKDAGAIPWSSVGAEYIVESTGVFTTIEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG ++ ++D  L ++G+ I VF    PAEIPWGD G  YVVES+GVF ++ +
Sbjct:    6 VGINGFGRIGRLVLRACLQKGIKVTAI-NDPFIDLQYMVYMFKYDSTHGRYKGEVH-MEDGKLIVDGQAISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            KVGINGFGRIGRL                NDPFI  +YM YMFKYDSTHG +K T + +  +  L   G  + V++ RDP+EIPWG +G D+VVES+GVFT
Sbjct:    8 KVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFT 108          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3PX_HORVU2.468e-2352.88Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PANVR4.210e-2350.48Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_ONCVO4.210e-2353.40Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_LYOSH5.498e-2350.48Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3PC_DIACA5.498e-2354.46Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CAEBR5.498e-2353.27Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P3_CAEBR7.181e-2354.21Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P_LENED9.379e-2350.00Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3PT_DANRE9.379e-2353.40Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3PC_PHYPA9.379e-2352.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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