FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 58/133 (43.61%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDD-----------------------------STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FK  I  ++D                               L ING  I +F +RDP++I WGD G +YVVES+GVFTT+ +
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEK 135          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 54/101 (53.47%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   +   DD TL    K + VF  R+P EIPWG+ G DYVVES+GVFT
Sbjct:    5 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN-GKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  L    GK    IKV++ RDPAEI WG  G DYVVES+GVFTT+ +
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKSQHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEK 112          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEIN-GKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  L    GK    IKV++ RDPAEI WG  G DYVVES+GVFTT+ +
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKSQHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEK 112          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 54/105 (51.43%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            + INGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG ++  D S L INGK + VF ++DPA +PWG  GVD  V+S+GVF  L   Q
Sbjct:    4 IAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVSH-DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            +GINGFGRIGRL                N+PF+D KYM YMFKYDSTHG FKGT+  ++   + +NG  I VF+++DPA I W   G +Y+VES+G+F +  +
Sbjct:    5 IGINGFGRIGRLVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGEFV-VNGNKIHVFAEKDPANIKWSSVGAEYIVESTGLFLSTEK 106          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 54/101 (53.47%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            KVGINGFGRIGR+                NDPFID  YMAYMFKYDSTHG F+G++       L I+G  I V ++RDPA I W   G +YV+ES+GVFTT
Sbjct:    5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVE-TKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTT 104          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            KV ING G+IGRL                NDPFI   Y AYMFKYDSTHG + G +   + +TL I+GK IKVF +RDPA++PWG+ G+D  ++S+GVF  L   Q
Sbjct:    3 KVAINGLGKIGRLVMRIALSRANVEVVAINDPFITVDYAAYMFKYDSTHGKYAGDVQY-EGNTLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            +D   K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + V D+ TL    K + VF  R+P +IPWG+ G D+VVES+GVFT
Sbjct:    2 ADKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFT 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINV-VDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            KVGINGFGRIGRL                NDPFI+  YM YMF YDSTHG F G I+    +  +E  GK    IKVF+ +DPAEI W + G +YV+ES+GVFTT+ +
Sbjct:    5 KVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNGKISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEK 112          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P1_JACOR9.379e-2343.61Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3PC_PETHY1.225e-2253.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_CAEEL1.225e-2254.21Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL1.225e-2254.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P1_KLUMA1.225e-2251.43Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_DICDI1.600e-2247.57Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P2_SCHPO1.600e-2253.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_ASHGO2.089e-2249.06Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PC_SINAL2.089e-2250.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_GLORO2.089e-2250.93Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
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