FC876165

Overview
NameFC876165
Unique NameFC876165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  391 RIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            RIGRL                NDPFID  YM YMF+YDSTHG FKGT+   ++  L INGK I +F +RDP  I WGD G +YVVES+GVFTT+ +
Sbjct:    1 RIGRLVTRAAFTSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFKGTVKA-ENGKLVINGKAITIFQERDPTNIKWGDAGAEYVVESTGVFTTMEK 95          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGR                 ND   DAK++A++ KYDS HG+FKG++   DDS + ++GK IKVF+++DP++IPWGD GVD V+E++GVF
Sbjct:    4 KVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIV-VDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVF 100          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  358 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            G  K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K   + V D+ TL    K + VF  R+P EIPWG+ G ++VVES+GVFTT
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTT 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D+++L I+GK + VF +RDPA +PWG++ VD  ++S+GVF  L   Q
Sbjct:    3 RVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGEVSH-DENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQ 107          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTT 669
            +VGINGFGRIGR+                NDPFI   YM YM KYD+ HG F G++    D  L +NG  I V ++RDP  IPWG  G DYVVES+GVFTT
Sbjct:    4 QVGINGFGRIGRIVLRATESNKDVQVVAINDPFIPLDYMVYMLKYDTVHGRFDGSVEA-KDGKLVVNGHAIAVSAERDPTSIPWGSAGADYVVESTGVFTT 103          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            +V INGFGRIGR+                NDPFI   Y AYMFKYDSTHG + G +   DD  L I+GK IK + +RDPA++PWGD  +D V+E++GVFT
Sbjct:    3 RVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEVTH-DDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFT 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            VGINGFGRIGRL                NDPFI  +Y +YMFKYDSTHG + G ++  +   + I+GK I+V+ +RDP  IPWG  GVDYV++S+GVF  L   Q
Sbjct:    5 VGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSH-EGENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQ 108          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 53/101 (52.48%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFT 666
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    + + VF  R+P EIPWG  G DYVVES+GVFT
Sbjct:    5 KIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFT 105          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  379 NGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRRLQ 684
            NGFGRIG L                NDPFI+ +YMAYMFKYDS HG ++G +   D   + ING+ IK  +  DP +IPWG+ G DYVVES+GVFTT+ + Q
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFIEGEYMAYMFKYDSVHGRYEGDVQG-DKHGITINGEQIKTLAMMDPTQIPWGEVGADYVVESTGVFTTVDKCQ 101          
BLAST of FC876165 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  358 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFTTLRR 678
            G  K+GINGFGRIGRL                NDPFIDA+YMAYMFKYDS H  + G +N   D  L + G+ I  F++ DP++I WG  G D V+ES+GVFT + +
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDGFL-VEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAK 108          
The following BLAST results are available for this feature:
BLAST of FC876165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
G3P_MESAU2.729e-2253.13Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_AQUAE2.729e-2251.52Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3PC_RANAC3.564e-2250.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA3.564e-2249.06Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_RHIRA3.564e-2251.49Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P1_CANGA3.564e-2251.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_PICCI4.655e-2249.52Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ATRNU4.655e-2252.48Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_SCEVA4.655e-2250.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CHLRE4.655e-2248.60Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001A10EF DevOvary1 Citrus clementina cDNA clone C32001A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876165 ID=FC876165; Name=FC876165; organism=Citrus clementina; type=EST; length=690bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACA
back to top