FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.098e-37
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            KKG WT EED IL  Y++A+G+G W  + K  GL RCGKSCRLRW+NYL  ++KRGN T +EE++II+LH  LGNRWSLIA  +PGRTDN++KNYWN+HLS+K+
Sbjct:   17 KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 120          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.446e-37
Identity = 67/117 (57.26%), Postives = 90/117 (76.92%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEG-SWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            MGRAPCC+K  +KKG W+ EED  L  YI+ +G G +W +LP+  GL RCGKSCRLRW+NYLR ++K G  + EEE II  L+ ++G+RWS+IA+ +PGRTDN+IKNYWN+ L +K+
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.446e-37
Identity = 71/144 (49.31%), Postives = 98/144 (68.06%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEG-SWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTLPVKVDVAAAGTGVAS 593
            MGRAPCC+K  +K+G W+ EED  L  YI+  G G +W +LP  AGL RCGKSCRLRW+NYLR +++ G+ T EE+ II  L AS+G+RWS+IA+++ GRTDN+IKNYWN+ L +K+     P     L +    ++A    +S
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIATMAPPPHHHLAIATSSSSASPSSSS 144          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEG-SWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTL------PVKVDV 566
            MGRAPCC+K  +K+G W+ EED  L  YI+  G G +W S P  AGL RCGKSCRLRW+NYLR ++K G+ + EE+ II  L A++G+RWS+IA+++PGRTDN+IKNYWN+ L +K+ +    SS   +      P+  DV
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDSSSSAMASPYLNPISQDV 141          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L +G WT  ED IL  YI  +GEG W +LP  AGL RCGKSCRLRW NYLR  +KRGNI+++EEE+II+LH  LGNRWSLIA  +PGRTDNEIKN+WNS+L +++
Sbjct:   14 LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRL 118          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 64/104 (61.54%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            KKG WT EED IL  Y++ +G+G W  + K  GL RCGKSCRLRW+NYL  ++ RGN T +EE++II+LH  LGNRWSLIA  +PGRTDN++KNYWN+HLS+K+
Sbjct:   13 KKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 116          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-35
Identity = 64/105 (60.95%), Postives = 84/105 (80.00%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            +KKG W+ EED  L +Y+ +NG+G W  + KNAGL RCGKSCRLRWINYLR DLKRG  + +EE++II+ H+ LGNRWS IA+ +PGRTDNEIKN+WNS + +++
Sbjct:   18 MKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 122          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 506
            LKKG WT+ ED IL  Y++ +GEG+W ++ KN GL RCGKSCRLRW N+LR +LK+G  TAEEE +II+LH+ +GN+W+ +A+++PGRTDNEIKNYWN+ + R
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 506
            LKKG WT+ ED IL  Y++ +GEG+W ++ KN GL RCGKSCRLRW N+LR +LK+G  TAEEE +II+LH+ +GN+W+ +A+++PGRTDNEIKNYWN+ + R
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 62/104 (59.62%), Postives = 81/104 (77.88%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            KKG WT EED+IL  Y+  +G G W  + +  GL RCGKSCRLRW+NYL  ++ +GN T +EE++II+LH  LGNRWSLIA  +PGRTDN++KNYWN+HLS+K+
Sbjct:   15 KKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
WER_ARATH1.098e-3763.46Transcription factor WER OS=Arabidopsis thaliana G... [more]
RAX3_ARATH2.446e-3757.26Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH2.446e-3749.31Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH4.173e-3751.06Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
TT2_ARATH7.118e-3764.76Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB23_ARATH1.214e-3661.54Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB46_ARATH1.028e-3560.95Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ1.753e-3560.19Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI1.753e-3560.19Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GL1_ARATH2.290e-3559.62Trichome differentiation protein GL1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
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