FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 62/104 (59.62%), Postives = 81/104 (77.88%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            KKG WT EED+IL  Y+  +G G W  + +  GL RCGKSCRLRW+NYL  ++ +GN T +EE++II+LH  LGNRWSLIA  +PGRTDN++KNYWN+HLS+K+
Sbjct:   15 KKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 118          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.906e-35
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  165 MGRAPC-CEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 506
            M + PC  + V ++KG WT EED IL  YI  +GEG W SL ++AGL R GKSCRLRW+NYLR D++RGNIT EE+ +I++LHA  GNRWS IA  +PGRTDNEIKNYW + + +
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQK 115          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 60/105 (57.14%), Postives = 81/105 (77.14%), Query Frame = 3
Query:  195 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            GL+KG WT EED +L + I   GEG W  +P  AGL RC KSCRLRW+NYL+  +KRG ++++E +++++LH  LGNRWSLIA  +PGRT N++KNYWN+HLS+K
Sbjct:    7 GLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 3
Query:  195 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            GL+KG WTAEED +L + I   GEG W  +P  AGL RC KSCRLRW+NYL+  +KRG  +++E +++++LH  LGNRWSLIA  +PGRT N++KNYWN+HLS+K
Sbjct:    7 GLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 3
Query:  165 MGRAPC-CEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            M + PC    V ++KG WT EED IL  +I  +GEG W ++ ++AGL R GKSCRLRW+NYLR D++RGNIT EE+ +I++LHA  GNRWS IA ++PGRTDNEIKNYWN
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWN 110          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 3
Query:  195 GLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            GL+KG WTAEED +L   I   GEG W  +P  AGL RC KSCRLRW+NYL+  +KRG ++ +E +++++LH  LGNRWSLIA  +PGRT N++KNYWN+HLS+K
Sbjct:    7 GLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 59/104 (56.73%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            +K+G W  EED IL  Y++ +GEG+W  + + +GL R GKSCRLRW NYLR ++KRG+++ +E+++II++H  LGNRWSLIA  +PGRTDNE+KNYWN+HL++K
Sbjct:   12 VKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            ++KG WT EED IL  YI  +G+G W SL K+AGL R GKSCRLRW+NYLR D++RGNIT EE+ II++LHA  GNRWS IA ++PGRTDNEIKN+W + + + I
Sbjct:   20 VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYI 124          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            MG +P     GL+KG WT EED +L + I   GEG W  +P   GL RC KSCRLRW+NYL+  +KRG + ++E +++++LH  LGNRWSLIA  +PGRT N++KNYWN+HLS+K
Sbjct:    1 MGESP----KGLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 3
Query:  165 MGRAPCCEKVG---LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFW-RPSSEKTLPVKVDVAAAGTGVASDRKAGKK 614
            MGR P    VG   ++KG W+ EED+ L  +I  +G G W S+P+ A L RCGKSCRLRWINYLR DLKRG  + +EE+ I+ LH  LGNRWS IAS++PGRTDNEIKN+WNS + +K+      P++ K +    D A A   +    +  +K
Sbjct:    1 MGR-PSSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPM-ASADTATAAAALPDAEEEDRK 152          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GL1_ARALY2.290e-3559.62Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB05_ANTMA3.906e-3559.13Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB75_ARATH2.532e-3457.14Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MY114_ARATH2.532e-3458.10Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB40_ANTMA3.306e-3460.00Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB90_ARATH4.318e-3458.10Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB82_ARATH5.640e-3456.73Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB21_ARATH5.640e-3461.90Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MY113_ARATH1.641e-3353.91Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB3_HORVU6.235e-3348.70Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]

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Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
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