FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.004e-32
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            +KG W+ EED+ L  +I + G   W ++P  AGL R GKSCRLRWINYLR  LKR  I+AEEEE I+  H+SLGN+WS IA  +PGRTDNEIKNYW+SHL +K
Sbjct:   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  186 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSS 536
            ++ G +KG WT +ED +L  ++   G+  W  + K +GL R GKSCRLRW+NYL   LKRG +T +EE ++++LHA  GNRWS IA  +PGRTDNEIKNYW +H+ +K     RP S
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVS 119          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSS 536
            +KG WT +ED +L  ++   G+  W  + K +GL R GKSCRLRW+NYL   LKRG +T +EE ++++LHA  GNRWS IA  +PGRTDNEIKNYW +H+ +K     RP S
Sbjct:    9 RKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPMS 120          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            ++KG WT +ED  L   ++  GE  W  + K +GL R GKSCRLRW+NYL   LKRG ++  EE +I++LHA  GNRWS IA  +PGRTDNEIKNYW +H+ +K
Sbjct:    8 IRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            ++KG WT +ED  L   ++  G+  W  + K +GL R GKSCRLRW+NYL   LK G ++ +EE +II+LHA  GNRWS IA  +PGRTDNEIKNYW +H+ +K
Sbjct:    8 MRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  204 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 506
            K +W  EED IL  Y+   G+ +W  +PK  GL     SCR RW+N+L+  LK+G  T EEE+ +++LHA LGN+WS +A   PGRTDNEIKN+WN+   R
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNARRMR 118          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L KG WT EED  + +++Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WNS + RK+
Sbjct:   19 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 122          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 61/162 (37.65%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTLPVKVDVAAAGTGVASDR-------KAGKKIGSAIMKNKSHSKKDG 662
            L KG WT +EDD++ K ++  G   W  + +     R GK CR RW N+L  ++K+   T +E+EII + H  LGN+W+ IA  +PGRTDN IKN+WNS + RK     R            V A+G+ + S R       K+G    S  M N  H+K+ G
Sbjct:  134 LIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNG-RIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERR-----------SVNASGSDLKSSRTHLITLIKSGGI--SKCMNNMQHNKESG 281          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT--FWRPSSEKTLP 551
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+    + + SS+  LP
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAGLP 208          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 518
            L KG WT EED+ + + ++  G   W  + K     R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WNS + RK+ T
Sbjct:   81 LVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRG-RMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVET 186          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
LAF1_ARATH9.004e-3261.17Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB48_ARATH7.622e-3150.43Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH2.218e-3051.79Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ4.624e-2853.85Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ2.295e-2752.88Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MY104_ARATH1.392e-2449.50Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB_AVIMB2.458e-2145.71Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB_DROME5.475e-2137.65Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYB_CHICK5.475e-2144.17Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYBB_XENLA5.475e-2144.86Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]

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Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
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