FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 518
            L KG WT EED  + + ++  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WNS + RK+ T
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 186          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT---FWRPSSEKTLPV 554
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+        PS     PV
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPV 210          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEK 542
            L KG WT EED  + + ++  G   W  + K+    R GK CR RW N+L  ++K+   T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WNS + RK+ T   P+  +
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFPAESR 194          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L KG WT EED  + + +   G   W  + K+    R GK CR RW N+L  D+K+ + T EE+ II   H  +GNRW+ IA  +PGRTDN IKN+WNS + RK+
Sbjct:   84 LVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKG-RIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKV 187          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT--FWRPSSEKTLP 551
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+    + + SS+ + P
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT--FWRPSSEKTLP 551
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+    + + SS+ + P
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQP 208          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 518
            L KG WT EED  + + ++  G   W  + K+    R GK CR RW N+L  ++K+   T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WNS + RK+ T
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDT 186          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  186 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            +K  L KG+WTAEED +L + ++  G   W  +   A +L  R GK CR RW N+LR D+K+   + EE+ ++I+ H  +GN+W+ IA  +PGRT+N IKN+WN+   R+
Sbjct:  211 KKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHI---AQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 317          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYBB_CHICK5.475e-2144.86Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBA_MOUSE7.151e-2146.67Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN7.151e-2146.67Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYB_MOUSE9.339e-2143.44Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYBB_MOUSE9.339e-2142.61Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBA_XENLA9.339e-2145.71Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYB_HUMAN1.220e-2043.33Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_BOVIN1.220e-2043.33Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBB_HUMAN1.593e-2044.86Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYB98_ARATH2.081e-2042.73Transcription factor MYB98 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
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