FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTLPVKVDVAAAGTG 584
            ++G W+A ED  L K ++  G G+W ++ +  G  R  K CR RW   L+  L  G +T EE  II++     G RW+ IA  + GR+DN +KNYWN   +RK +   R S+ + +    DV  +  G
Sbjct:    8 RRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGT-RTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRKKNQLRRQSAPRRVSAS-DVLRSSPG 133          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 39/133 (29.32%), Postives = 62/133 (46.62%), Query Frame = 3
Query:  168 GRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIK-NYWNSHLSRKIHTFWRPSSEKTLPVKVD 563
            GR      +     +WT EED  L + +   GE  W+ +    G  + G  C   W   L  D+++G    +EEE++++L    G+ W  IA  +  RTD + +  Y  S  SR++   W P  ++ L  KVD
Sbjct:   55 GRGQIQNGIRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCRYQYLKSLQSREV--AWVPKEDEVLVKKVD 185          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB1_NEUCR5.863e-1535.94Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MYBM_DICDI5.136e-1129.32Myb-like protein M OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
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