FC876169

Overview
NameFC876169
Unique NameFC876169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC876169 vs. ExPASy Swiss-Prot
Match: YP68_CAEEL (Uncharacterized protein B0495.8 OS=Caenorhabditis elegans GN=B0495.8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 43/166 (25.90%), Postives = 86/166 (51.81%), Query Frame = 2 
Query:   98 DAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKM-DMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKEADQYDYEGKTDLKIRALEVVEELRTK 592
            D MR  +  LMG+    +  + +  +    VCR +L G+CPH++   +++ ++  C KVH    + +YE A+ +    YD +  + I+  +   D +I +  ++LEDD        S +  ++  +V E+ ++I + + + ++   EGK +  ++  + VEELR K
Sbjct:    3 DQMRDMIAQLMGSQHVDNKEKPSMPFDHHSVCRAFLLGVCPHDMVPDSRLQNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDD---VKTQTSQAADSKAKQVAEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEELREK 165
The following BLAST results are available for this feature:
BLAST of FC876169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YP68_CAEEL6.359e-1225.90Uncharacterized protein B0495.8 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC32001B05EF DevOvary1 Citrus clementina cDNA clone C32001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876169 ID=FC876169; Name=FC876169; organism=Citrus clementina; type=EST; length=736bp
GGTGGCTCTTGGGTCTTGTCTATTAACTCCAAAATCTCGAAAGCTCACAA
ACCCTAGTTCTGAGTCTCGAGTGCTCGACTCTCATTCTGACAAAATGGAC
GCAATGAGGAAGCAACTAGACGTCCTGATGGGAGCCAATCGAAACGGCGA
CGTACGAGAAGTTAATCGCAAGTACTACGATCGCGATGTTTGCCGTCTCT
ACTTGGCCGGACTTTGCCCTCACGAGCTCTTCCAATTAACGAAAATGGAT
ATGGGGCCATGTCCGAAGGTTCATTCTTTGCAGTTGCGAAAAGAATATGA
AGAAGCCAAGGCAAAAGGCGTTGATAATTATGACAGAGAATTAGAAGATG
CTATTGATAGACTTATTGTTGAGTGTGATAGGAAAATTGGTAGAGCTCTT
AAACGTCTTGAAGATGACGATGCAAAGGCTGCTATTGCTATATCAGTCTC
GGAGGTGACTCAGACTCCAGAGGTTCTTGAGTTGTCAAAACAGATCAAAG
AAAAGTTGAAAGAAGCTGATCAATATGATTATGAAGGCAAGACTGATCTT
AAGATTCGAGCTTTGGAGGTGGTAGAAGAACTCAGAACAAAAAGAGCTGA
TAAACAGTCCATGCTCCTCTTGGATGCTTTCAATAAAGATAGAGCATCGT
TGCCTCAACCCCTTCCCAACCCACCACCATTGGCACCTTTGCCAATTCCT
GCCACAGATGCTCGTACTCAGGAAATGATAAATGAA
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