FC876170

Overview
NameFC876170
Unique NameFC876170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876170 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  327 VFVMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKGGPLNYNWEGYAELIQMVKKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 620
            VFVM PL+ +++        A    L+ LK+ GV G+  D WWG VE  G   ++W  Y      V+  GLK   +MS H CGGNVGD+  IP+P WV
Sbjct:   40 VFVMGPLEKVTDFN------AFKDQLITLKNNGVYGITTDIWWGYVENAGENQFDWSYYKTYADTVRAAGLKWVPIMSTHACGGNVGDTVNIPIPSWV 131          
BLAST of FC876170 vs. ExPASy Swiss-Prot
Match: AMYB_PAEPO (Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  333 VMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKGGPLNYNWEGYAELIQMVKKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 620
            VM PL  +++ G   K       L  LK+ GV  +  D WWG VE  G   ++W  Y      VK+ GLK   ++S H+CGGNVGD C IPLP W+
Sbjct:   45 VMGPLAKINDWGSFKK------QLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWL 134          
BLAST of FC876170 vs. ExPASy Swiss-Prot
Match: AMYB_BACFI (Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  333 VMLPLDTLSNSGHLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKGGPLNYNWEGYAELIQMVKKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 620
            VM PL  +++ G   K       L  LK+ GV  +  D WWG VE  G   ++W  Y      VK+ GLK   ++S H+CGGNVGD C IPLP W+
Sbjct:   45 VMGPLAKINDWGSFKK------QLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYADAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWL 134          
BLAST of FC876170 vs. ExPASy Swiss-Prot
Match: AMYB_BACCI (Beta-amylase OS=Bacillus circulans PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 3
Query:  402 LMALKSAGVEGVMVDAWWGLVEKGGPLNYNWEGYAELIQMVKKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWV 620
            L  LK+ GV  +  D WWG VE  G   ++W  Y      VK+ GLK   ++S H+CGGNVGD C IPLP W+
Sbjct:   63 LTTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYADTVKQAGLKWVPIISTHRCGGNVGDDCNIPLPSWL 135          
BLAST of FC876170 vs. ExPASy Swiss-Prot
Match: AMYB_BACCE (Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 3
Query:  414 KSAGVEGVMVDAWWGLVEKGGPLNYNWEGYAELIQMVKKHGLKLQVVMSFHQCGGNVGDSCTIPLPPWVLEEIS 635
            K  G   + VD WWG +EK G   +++       Q VK  G+K+  ++S HQCGGNVGD C +P+P WV  + S
Sbjct:   69 KQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQKS 142          
The following BLAST results are available for this feature:
BLAST of FC876170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_THETU9.817e-1641.84Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]
AMYB_PAEPO1.282e-1541.67Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 ... [more]
AMYB_BACFI1.282e-1541.67Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV... [more]
AMYB_BACCI1.085e-1446.58Beta-amylase OS=Bacillus circulans PE=3 SV=1[more]
AMYB_BACCE1.327e-1241.89Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32001B06EF DevOvary1 Citrus clementina cDNA clone C32001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876170 ID=FC876170; Name=FC876170; organism=Citrus clementina; type=EST; length=649bp
GATTCCTTATTGGCCATTGCTCTTCATTTCCAAAGGAAAAAGAAAAATAT
AGTGCTATGGCCTTAACACTACGTTCTTCAACTTCTTTTATCAACTTAAA
TGACACCAAAACCATCAAAACACCCGACGAATTCTCATCACCCACTACTT
GTTTTGCCAAAATCAAGCCTTCACGCCGTCTCCGGGCTAAGAGTTCAATG
CAAGAAGCTCAGCTCTGTCGTGACAAACATTCAACAATGGGAGGAATTAT
TAGGAAGAGTGAGAAAAGAGAGATGGTTCATGAGCTCGCGAGTCCTCCTC
ACAATCATCATAGAAATAAGGTGCCTGTGTTTGTGATGTTGCCACTGGAC
ACGCTGTCAAACTCGGGGCACTTGAATAAGCCTAGAGCTATGAATGCTAG
TTTGATGGCCTTGAAAAGTGCCGGTGTTGAAGGAGTAATGGTTGATGCTT
GGTGGGGTTTGGTTGAGAAAGGAGGACCTCTCAATTATAACTGGGAAGGC
TATGCTGAGTTGATTCAAATGGTGAAAAAGCATGGCTTGAAGCTACAAGT
TGTTATGTCGTTTCATCAGTGTGGTGGAAATGTTGGAGACTCCTGCACTA
TTCCGCTACCTCCATGGGTGCTTGAAGAAATCAGCAAGAATCCTGACCT
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