FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 60/122 (49.18%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKG I V + + L INGK I+ ++++DPA IPW + G  YVVES+GVF           GGAK   IS+ S
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFKGDIKV-EGNDLTINGKTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 61/125 (48.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG ++      +  NGK    I V + +DPAEIPWG  G +YVVES+GVF           GGAK   IS+ S
Sbjct:    5 KIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHGRFKGHVSAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVESTGVFTHTEKASAHLKGGAKKVIISAPS 129          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 60/122 (49.18%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFID +Y AYM KYDS+HGVFKG I   D   L +NGK +K  ++RDP+ IPW   G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHGVFKGEIKK-DADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVFTTTEKAKAHLTGGAKKVIISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 61/128 (47.66%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            S G  K+GINGFGRIGRL                NDPFI   YM+YMFKYDS HG +K   +NV D  TL    K + VF  R+P EIPWG+ G +YVVES+GVF            GAK   IS+ S
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPS 130          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +YVVES+GVF           GGAK   IS+ S
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPS 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +YVVES+GVF           GGAK   IS+ S
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPS 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 58/122 (47.54%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFI   YM YMFKYD+ HG +KGT+ V  D  L ++G  I VF++++PA+I WG  G DY+VES+GVF           GGAK   IS+ S
Sbjct:    4 KVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYKGTVEV-KDGKLVVDGHAITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 56/121 (46.28%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +GINGFGRIGRL                N+PF+D KYM YMFKYDSTHG FKGT+  ++   + +NG  I VF+++DPA I W   G +Y+VES+G+F           GGAK   IS+ S
Sbjct:    5 IGINGFGRIGRLVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGEFV-VNGNKIHVFAEKDPANIKWSSVGAEYIVESTGLFLSTEKAGVHLKGGAKKVVISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 61/123 (49.59%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   I V D+ TL    K + VF  R+P EIPWG  G DYVVES+GVF           GGAK   IS+ S
Sbjct:    5 KIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VFS+RDPA I W   G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGANVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPS 122          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_PHANO4.278e-2449.18Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_ONCVO4.278e-2448.80Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_CLAPU4.278e-2449.18Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3PC_PINSY4.278e-2447.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROPS4.278e-2449.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_DROME4.278e-2449.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_SCHCO5.587e-2447.54Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_DICDI5.587e-2446.28Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3PC_DIACA5.587e-2449.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_DROME5.587e-2448.78Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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