FC876174

Overview
NameFC876174
Unique NameFC876174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 66/197 (33.50%), Postives = 97/197 (49.24%), Query Frame = 3
Query:   78 TAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS 665
            T   + K H+NI  IGHVD GK+T T  +   L   D  V +++FE+               +D    ER RGITI+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  + +PFV  S
Sbjct:    4 TKFERTKPHVNIGTIGHVDHGKTTLTAAISAVLASKDNTVQLKKFEE---------------IDSAPEERARGITINTSHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMVD---DPELLELVELEVRELLSKYDFPGDTIPFVTGS 175          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 66/193 (34.20%), Postives = 98/193 (50.78%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS 665
            + K HINI  IGHVD GK+T T  +   L  ID  V +++F++               +D    E+ RGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L K  +  E+VPFV  S
Sbjct:    8 RSKPHINIGTIGHVDHGKTTLTAAISAVLASIDNTVKLKKFDE---------------IDAAPEEKARGITINTSHVEYQTPLRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMID---DEELLELVELEVRELLSKYDFPGEEVPFVAGS 175          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CHLRE (Elongation factor Tu, chloroplastic OS=Chlamydomonas reinhardtii GN=tufA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 63/192 (32.81%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS 665
            ++K H+NI  IGHVD GK+T T  +   L      V +++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D       K   + +  EV   L K  +  +++P VP S
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAAGGSVGKKYDE---------------IDSAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNVVVFLNKEDQVD---DKELLELVELEVRETLDKYEFPGDEIPVVPGS 174          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_ANAMM (Elongation factor Tu OS=Anaplasma marginale (strain St. Maries) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 70/187 (37.43%), Postives = 93/187 (49.73%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            K HIN+  IGHVD GK+T T  L   L            + ++  NK   KY  + DK   ER RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  EV   L   GY+ + V  V
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVL-----------TRRLSGANK-VVKYDEI-DKAPEERARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTREHILLAKQVGVKDIVTWINKCDVVE---DEEMLSIVEMEVRELLSNYGYDGDGVDVV 169          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 64/193 (33.16%), Postives = 97/193 (50.26%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPTS 665
            ++K H+NI  IGHVD GK+T T  +   L      V + F                 +D    E+ERGITI+ +  +++T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK+D    K       E+V+ E+   L K  Y+ E +P +  S
Sbjct:    8 RDKPHLNIGTIGHVDHGKTTLTASITKVLAKKGLAVAKEFSS---------------IDNAPEEKERGITINTSHVEYQTEIRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPNLVVFMNKVDQVDDK----EILELVEIEIRELLSKYEYDGENIPIIQGS 174          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_PROAC (Elongation factor Tu OS=Propionibacterium acnes GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 68/196 (34.69%), Postives = 101/196 (51.53%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFE 674
            + K H NI  IGH+D GK+T T         I K + +++     E+N+ S F     +DK   ER+RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V  S F+
Sbjct:    8 RTKPHCNIGTIGHIDHGKTTLTA-------AISKVLHDKYP----ELNEESPFDQ---IDKAPEERQRGITISIAHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPAIVVALNKCDMVD---DEELIELVEMEVRELLTSQEFDGDNCPVVRISAFQ 179          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 62/192 (32.29%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   81 AMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            A  + K H+NI  IGHVD GK+T T  +                K ++E    +F     +D+   ER RGITI  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ +  P +
Sbjct:   29 AFDRSKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHLVVFVNKVDTID---DPEMLELVEMEMRELLSQYGFDGDNTPVI 195          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_PELPB (Elongation factor Tu OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 68/200 (34.00%), Postives = 98/200 (49.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            ++K H+NI  IGHVD GK+T T  +   L               A+    + +    +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P V  S     EGD
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVL---------------AKQGLAAARDFGSIDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPSLVVFLNKVDIADPEL----IELVELELRELLTQYNFPGDDIPIVKGSALKALEGD 181          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_MYCHP (Elongation factor Tu OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=tuf PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 67/205 (32.68%), Postives = 104/205 (50.73%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIER 695
            + K H+NI  IGHVD GK+T T  +   L           +K +AE       YA + D    E+ RGITI+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK+D       +     +  +V S L + G++ +  P +  S     +GD   E+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIATVLA----------KKGLAEARD----YASI-DNAPEEKARGITINTSHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPKIVVFLNKIDMFKDDEREEMVGLVEMDVRSLLSEYGFDGDNAPIIAGSALKALQGDPEYEK 190          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 66/192 (34.38%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS 665
            + K H+NI  IGHVD GK+T T  +   L               ++   +S K+  + D    ER RGITI+ A  ++ET K+Y   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L+K  +   ++PFV  S
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAISATL---------------SQYTGKSKKFDEI-DSAPEERARGITINTAHVEYETDKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANGPMP-------QTREHILLAKQVGVPYIVVFLNKADMVD---DEELLELVQLEVQELLEKYDFPGSEIPFVAGS 173          
The following BLAST results are available for this feature:
BLAST of FC876174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAME2.409e-2133.50Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU_CYACA2.409e-2134.20Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU_CHLRE2.409e-2132.81Elongation factor Tu, chloroplastic OS=Chlamydomon... [more]
EFTU_ANAMM2.409e-2137.43Elongation factor Tu OS=Anaplasma marginale (strai... [more]
EFTU_SULMW3.146e-2133.16Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]
EFTU_PROAC3.146e-2134.69Elongation factor Tu OS=Propionibacterium acnes GN... [more]
EFTU_PICGU3.146e-2132.29Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_PELPB3.146e-2134.00Elongation factor Tu OS=Pelodictyon phaeoclathrati... [more]
EFTU_MYCHP3.146e-2132.68Elongation factor Tu OS=Mycoplasma hominis (strain... [more]
EFTU_GUITH3.146e-2134.38Elongation factor Tu, chloroplastic OS=Guillardia ... [more]

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Properties
Property NameValue
Genbank descriptionC32001B11EF DevOvary1 Citrus clementina cDNA clone C32001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876174 ID=FC876174; Name=FC876174; organism=Citrus clementina; type=EST; length=707bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGTTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCACCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTT
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