FC876176

Overview
NameFC876176
Unique NameFC876176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876176_ssr108 microsatellite FC876176_ssr108:108..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  212 DDGSVMLKLAQSLQNLPSD------WSSTSSTGYCEWTGINCDNSN--RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP 673
            +D   +L++ +SL   P +      W+S  +  YC WTG+ CDN+   RV  ++L   GL+G++SP       L  L    NN+ G IP +L+N TSL+ ++L +N  T         L N++ L + DN  +     P  L    +L  L + +  + G IP
Sbjct:   25 NDLQTLLEVKKSLVTNPQEDDPLRQWNS-DNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVG--DIPETLGNLVNLQMLALASCRLTGPIP 184          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 48/142 (33.80%), Postives = 65/142 (45.77%), Query Frame = 2
Query:  254 NLPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPS-LANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPD 676
            N+   W  T     C W  + C+N N V  + L  + LSG L P++  L  L+ L    NNI G +PS L N T+L  + L  N+FT         L  L+ L L  N N    P P  LT   +L  L + N  + G +PD
Sbjct:   48 NVLQSWDPTL-VNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRL--NNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPD 186          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 45/163 (27.61%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  212 DDGSVMLKLAQSLQ---NLPSDWSSTSSTGYCEWTGINCDN-SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFY 685
            ++G+ +L++ +S +   N+  DW+++ S+ YC W G++C+N +  V  ++L+   L G +SP I  L  L ++  + N ++G IP  + + +SLQ++ L  N  +         L  L+ L L +N  +   P P+ L++  +L  L +    + G IP + Y
Sbjct:   25 EEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIG--PIPSTLSQIPNLKILDLAQNKLSGEIPRLIY 185          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 49/142 (34.51%), Postives = 66/142 (46.48%), Query Frame = 2
Query:  254 NLPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIPS-LANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPD 676
            N+   W  T     C W  + C+N N V  + L  + LSG L PE+  L  L+ L    NNI G IPS L N T+L  + L  N+F+         L+ L+ L L  N N      P  LT  T+L  L + N  + G +PD
Sbjct:   45 NVLQSWDPTL-VNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRL--NNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPD 183          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  248 LQNLPSD----WSSTSSTGYCEWTGINCD-NSNRVTTISLAKSGLSGTL-SPEISSLTQLETLSFQMNNIAGAIPS-LANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDV 679
            LQ +P +    W+ + S   C W G+ C+ N + + ++ L  +GL G + S  +  LT+L  LS + N ++G IPS  +N T L+ +YL +N F+      F  L NL  L +S N      PF   +   T LT L++ N    G +P +
Sbjct:   36 LQQIPHENRLQWNESDSA--CNWVGVECNSNQSSIHSLRLPGTGLVGQIPSGSLGRLTELRVLSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPF--SVNNLTHLTGLFLGNNGFSGNLPSI 182          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 52/161 (32.30%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  227 MLKLAQSLQN--LPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAI-PSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFYSFFNL 700
            ++   +SL+N  L S W+ +SS  +C+W G+ C    RV ++SL    L G +  EISSL  L  L    N  +G I P + N   LQ + L  N+ T +       L  L  L LSDN      P P+      +L++L + N ++ G IP       NL
Sbjct:   30 LISFKRSLENPSLLSSWNVSSSASHCDWVGVTC-LLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLP-PSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNL 188          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  215 DGSVMLKLAQSLQNLPSDWSSTSSTGY---CEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP 673
            DG V++K   S+   P     T +  +   C W GI+C+N ++V T+SL  S L G++  ++ SL  L++L    N+  G +P S  NA  L+ + L +N  +         L NL  L+LSD  N      P  L    +LT + ++N    G IP
Sbjct:   25 DGLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSD--NALAGKLPTNLASLRNLTVVSLENNYFSGEIP 179          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  215 DGSVMLKLAQSLQNLPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAI-PSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFYSFFNL 700
            DG  +L L +   +L S W     T  C W GI C   NRV ++S+  + L+ +  P++SSL+ L+ L+    N++G I PS    T L+ + L +N+ +         L+ LQ L L  N N      P++++   +L  L + +  + G IP  F S  +L
Sbjct:   30 DGQALLSLKRPSPSLFSSWDPQDQTP-CSWYGITCSADNRVISVSIPDTFLNLSSIPDLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLIL--NANKLSGSIPSQISNLFALQVLCLQDNLLNGSIPSSFGSLVSL 189          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  215 DGSVMLKLAQSLQNLPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEI-SSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKS----TSLTTLYMDNANIFGLIPDV 679
            D S +L    ++      W     T  C WTG+ CD   RVT + L    LSG +   I  +LTQL TLS ++N + G++P  L + + L+ +YL  N F+         L+NL  L+L++N       F  E++      T L TLY++N  + G + D+
Sbjct:   34 DKSALLSFRSAVGGRTLLWD-VKQTSPCNWTGVLCDGG-RVTALRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAEN------EFSGEISSGFKNLTRLKTLYLENNKLSGSLLDL 186          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: RLK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 49/160 (30.63%), Postives = 75/160 (46.88%), Query Frame = 2
Query:  215 DGSVMLKLAQSL----QNLPSDWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPE-ISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNF-TSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPD 676
            D   +LK  +SL    +N  + W++ S    C W+G+ C N   V  + +    LSG++  E +S LT L TLSF  N   G  P      +L+ +YL NN F   +P   F+G+  L+ + L+ N        P+ + K   L  L +D     G IP+
Sbjct:   34 DSEAILKFKESLVVGQENALASWNAKSPP--CTWSGVLC-NGGSVWRLQMENLELSGSIDIEALSGLTSLRTLSFMNNKFEGPFPDFKKLAALKSLYLSNNQFGGDIPGDAFEGMGWLKKVHLAQNKFTG--QIPSSVAKLPKLLELRLDGNQFTGEIPE 188          
The following BLAST results are available for this feature:
BLAST of FC876176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GSO1_ARATH1.066e-1330.67LRR receptor-like serine/threonine-protein kinase ... [more]
SERK2_ARATH5.290e-1333.80Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
ERECT_ARATH6.910e-1327.61LRR receptor-like serine/threonine-protein kinase ... [more]
SERK1_ARATH1.539e-1234.51Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
Y2267_ARATH2.626e-1231.79Probable inactive receptor kinase At2g26730 OS=Ara... [more]
EXS_ARATH3.429e-1232.30Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y4372_ARATH4.479e-1231.21Probable LRR receptor-like serine/threonine-protei... [more]
Y1341_ARATH4.479e-1230.06Probable LRR receptor-like serine/threonine-protei... [more]
RLK90_ARATH4.479e-1231.68Probable inactive receptor kinase RLK902 OS=Arabid... [more]
RLK_ARATH7.639e-1230.63Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC32001C02EF DevOvary1 Citrus clementina cDNA clone C32001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876176 ID=FC876176; Name=FC876176; organism=Citrus clementina; type=EST; length=700bp
CGGGGGAGACTTTCAGTGGGAGGCAGACAGTTCGGTTTGGCTGCTGAACT
AAAAGAAAGCAACAGCAACTCCCTTCATTCAAAAAGAAGAAAATCCAACC
AACCCCAAAAGAAAGAAAGAAACAAACAGACACATGATGCGCAAAAAACC
CCAGGTTTCCATCTGCGCCGTCGTCCTTCTCTTGCTCCAGTTGACGACGA
CGTCGTTGGGCGACGACGGGTCGGTGATGCTGAAGCTAGCTCAGTCGCTG
CAGAACCTACCCTCTGACTGGTCCAGCACATCCTCAACCGGGTACTGCGA
GTGGACCGGCATCAATTGCGACAACTCAAACCGCGTGACAACCATAAGCC
TCGCAAAAAGCGGACTCAGTGGCACTCTTTCGCCGGAAATCTCATCCCTC
ACGCAGCTGGAAACCCTTTCTTTCCAAATGAACAACATTGCCGGCGCCAT
TCCCTCCCTTGCCAACGCGACGTCGTTGCAAGATATCTATTTGGACAACA
ACAACTTCACCAGCGTACCCACTGGCTGCTTCGACGGCTTAACGAACTTG
CAAGTGTTGAGTCTCAGCGACAACCCAAATCTTGCCCCTTGGCCTTTTCC
TAATGAACTGACCAAATCTACAAGCCTCACAACTTTGTACATGGATAATG
CCAACATCTTTGGTCTAATCCCTGACGTTTTTTATTCCTTTTTCAATCTG
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