FC876176

Overview
NameFC876176
Unique NameFC876176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876176_ssr108 microsatellite FC876176_ssr108:108..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 44/128 (34.38%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  296 CEWTGINCD-NSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP 673
            C W G+ CD  + RV T++L    + G L P+I  L  L  L    N + GAIP +L N T+L++I+L +N FT         L  LQ L +S   N    P P  L +   L+   + N  + G IP
Sbjct:   62 CNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSS--NTLSGPIPASLGQLKKLSNFNVSNNFLVGQIP 187          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 2
Query:  212 DDGSVMLKLAQSLQNLPS---DWSSTSSTGYCEWTGINCDN-SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLD---NNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFY 685
            ++G  ++ +  S  NL +   DW    ++  C W G+ CDN S  V +++L+   L G +SP I  L  L+++  Q N +AG IP  + N  SL  +YLD   N  +  +P      L  L+ L+L +N      P P  LT+  +L  L +   ++ G I  + Y
Sbjct:   28 NEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASL--VYLDLSENLLYGDIPFS-ISKLKQLETLNLKNNQ--LTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLY 188          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  269 WSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTL-SPEISSLTQLETLSFQMNNIAGAIPSLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFYSF 691
            +S T    YC+W G+ C    R+  + L+  GL G   S  +S L QL  LS + N++ G IP L++  +L+ ++L  N F+         L  L +LS+S N N +    P+E+     LT+L +D     G +P +  SF
Sbjct:   53 YSLTERYDYCQWRGVKC-AQGRIVRLVLSGVGLRGYFSSATLSRLDQLRVLSLENNSLFGPIPDLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHN-NFS-GSIPSEINALDRLTSLNLDFNRFNGTLPSLNQSF 191          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  215 DGSVMLKLAQSLQNLPSDWSSTSSTGYCEWTGINCD-NSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQ-MNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFYSF 691
            D  V+L++ ++L N     S   +T  C W  + CD  ++R+ ++++    LSG +   +  L  LETL F+ ++N+ G IP ++A    L+ + L   N +      F  L NL  L LS N NL+  P P  L+   +L  L++D  ++ G IPD F  F
Sbjct:   34 DKKVLLQIKKALDNPYILASWNPNTDCCGWYCVECDLTTHRINSLTIFSGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFN-NLSG-PIPGSLSLLPNLGALHLDRNHLTGPIPDSFGKF 193          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 46/164 (28.05%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  212 DDGSVMLKLAQSLQNLPS---DWSSTSSTGYCEWTGINCDN-SNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDI-YLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVFY 685
            ++G  ++ +  S  N+ +   DW    +  +C W G+ CDN S  V +++L+   L G +S  +  L  L+++  Q N + G IP  + N  SL  + +  N  F  +P      L  L+ L+L +N      P P  LT+  +L TL +    + G IP + Y
Sbjct:   30 NEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPFS-ISKLKQLEFLNLKNNQ--LTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLY 190          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 48/128 (37.50%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  296 CEWTGINCD-NSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIP 673
            C W G+ CD  + RV  +SL    L G L PE+  L QL  L    N +  +IP SL N T+L+ IYL NN  T         L+ L+ L LS+N NL     P  L +   LT   + N  + G IP
Sbjct:   61 CNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNN-NL-NGAIPASLGQLKRLTKFNVSNNFLVGKIP 186          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  215 DGSVMLKLAQSLQNLP----SDWSSTSSTGYCEWTGINCDNSN--------RVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVF 682
            DG ++L    S+   P     +W+   +T  C WTG+ C            RVT++ L    L G+++P++ S+  L  L    N   G++P S+ NAT LQ I L +NN +       + +TNLQ+L+LS N      P    L K  +LT + +      G IP  F
Sbjct:   30 DGVLLLTFKYSILTDPLSVLRNWNYDDATP-CLWTGVTCTELGKPNTPDMFRVTSLVLPNKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLK--NLTVVSLSKNTFSGDIPSGF 195          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 52/162 (32.10%), Postives = 71/162 (43.83%), Query Frame = 2
Query:  269 WSSTSSTGYCE-WTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLANATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNP----------------------NLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVF 682
            W++++S+  C  W GI C    +V  I L   GL GT+S +I  L  L  LS   N IAG++P SL    SL+ +YL NN  +            LQ L LS N                       N    P P  + +S +LT L + + N+ G IPD F
Sbjct:   74 WNNSASSQVCSGWAGIKCLRG-QVVAIQLPWKGLGGTISEKIGQLGSLRKLSLHNNVIAGSVPRSLGYLKSLRGVYLFNNRLSGSIPVSLGNCPLLQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDLQHNNLSGSIPDFF 234          
BLAST of FC876176 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 49/165 (29.70%), Postives = 76/165 (46.06%), Query Frame = 2
Query:  212 DDGSVMLKLAQSLQNLPS------DWSSTSSTGYCEWTGINCDNSNRVTTISLAKSGLSGTLSPEISSLTQLETLSFQMNNIAGAIP-SLAN-ATSLQDIYLDNNNFTSVPTGCFDGLTNLQVLSLSDNPNLAPWPFPNELTKSTSLTTLYMDNANIFGLIPDVF 682
            DD   +L+L  S    P       DW+S  S  YC WTG+ C     +  ++L+  GL+G++SP I     L  +    N + G IP +L+N ++SL+ ++L +N  +         L NL+ L L DN        P       +L  L + +  + GLIP  F
Sbjct:   28 DDLQTLLELKNSFITNPKEEDVLRDWNS-GSPSYCNWTGVTC-GGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNE--LNGTIPETFGNLVNLQMLALASCRLTGLIPSRF 188          
The following BLAST results are available for this feature:
BLAST of FC876176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
FEI1_ARATH1.303e-1134.38LRR receptor-like serine/threonine-protein kinase ... [more]
ERL1_ARATH1.303e-1130.12LRR receptor-like serine/threonine-protein kinase ... [more]
Y5720_ARATH2.223e-1131.69Probable inactive receptor kinase At5g67200 OS=Ara... [more]
PGIP_VITVI2.903e-1131.48Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
ERL2_ARATH3.791e-1128.05LRR receptor-like serine/threonine-protein kinase ... [more]
FEI2_ARATH4.952e-1137.50LRR receptor-like serine/threonine-protein kinase ... [more]
RPKL_ARATH8.446e-1130.77Receptor protein kinase-like protein At4g34220 OS=... [more]
IMK2_ARATH8.446e-1132.10Probably inactive leucine-rich repeat receptor-lik... [more]
GSO2_ARATH8.446e-1129.70LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC32001C02EF DevOvary1 Citrus clementina cDNA clone C32001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876176 ID=FC876176; Name=FC876176; organism=Citrus clementina; type=EST; length=700bp
CGGGGGAGACTTTCAGTGGGAGGCAGACAGTTCGGTTTGGCTGCTGAACT
AAAAGAAAGCAACAGCAACTCCCTTCATTCAAAAAGAAGAAAATCCAACC
AACCCCAAAAGAAAGAAAGAAACAAACAGACACATGATGCGCAAAAAACC
CCAGGTTTCCATCTGCGCCGTCGTCCTTCTCTTGCTCCAGTTGACGACGA
CGTCGTTGGGCGACGACGGGTCGGTGATGCTGAAGCTAGCTCAGTCGCTG
CAGAACCTACCCTCTGACTGGTCCAGCACATCCTCAACCGGGTACTGCGA
GTGGACCGGCATCAATTGCGACAACTCAAACCGCGTGACAACCATAAGCC
TCGCAAAAAGCGGACTCAGTGGCACTCTTTCGCCGGAAATCTCATCCCTC
ACGCAGCTGGAAACCCTTTCTTTCCAAATGAACAACATTGCCGGCGCCAT
TCCCTCCCTTGCCAACGCGACGTCGTTGCAAGATATCTATTTGGACAACA
ACAACTTCACCAGCGTACCCACTGGCTGCTTCGACGGCTTAACGAACTTG
CAAGTGTTGAGTCTCAGCGACAACCCAAATCTTGCCCCTTGGCCTTTTCC
TAATGAACTGACCAAATCTACAAGCCTCACAACTTTGTACATGGATAATG
CCAACATCTTTGGTCTAATCCCTGACGTTTTTTATTCCTTTTTCAATCTG
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