FC876177

Overview
NameFC876177
Unique NameFC876177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10303 contig Ccv1_Contig10303:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876177 vs. ExPASy Swiss-Prot
Match: KATG_BORA1 (Catalase-peroxidase OS=Bordetella avium (strain 197N) GN=katG PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 45/104 (43.27%), Postives = 56/104 (53.85%), Query Frame = 2 
Query:  302 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAK 607
            PL +R+AWHSAGTY V    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L G V +E  G     F  GR+D  EP Q+    D K
Sbjct:   84 PLFIRMAWHSAGTYRVGDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKKKYGNKISWADLFILTGNVALETMGFKTFGFGGGREDTWEPDQDVYWGDEK 187
The following BLAST results are available for this feature:
BLAST of FC876177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
KATG_BORA14.993e-1143.27Catalase-peroxidase OS=Bordetella avium (strain 19... [more]

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Properties
Property NameValue
Genbank descriptionC32001C03EF DevOvary1 Citrus clementina cDNA clone C32001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876177 ID=FC876177; Name=FC876177; organism=Citrus clementina; type=EST; length=705bp
CCTCCGCCGCTTTCAGATGTCTAGGATCTATGCTTTTCTGTTTCTCATTG
TGCATTCATCGGAAAGTGACGTTTACAGATCTGTTCCGTACGCCACCGTT
TTGAAATGCCGATCGTCGTTTTAACGTAGAATGTGAAAGTGTTTTTGTTT
TTGTTCTTGTTATTTCCTAAAACTGTTTTTTATTTTGAAAGCAGTTGAAA
AGATGACGAAGAATTACCCCACTGTTAGCGAGGATTACAAGAAGGCCGTG
GAGAAATGCAAGAGGAAGCTCAGAGGCTTCATCGCTGAGAAGAACTGCGC
TCCACTCATGCTCCGTATCGCGTGGCACTCAGCTGGTACATATGATGTGA
AGACCAAGACCGGAGGTCCATTCGGAACCATGAGGCTCGCTGCTGAGCAG
GCACACTCAGCCAACAACGGCCTCGATATTGCCGTTAGGCTTTTGGAGCC
GTTCAAGGAGCAGTTCCCTACCATCTCCTACGCTGACCTTTATCAGCTTG
CTGGTGTTGTTGGCGTTGAGGTTACCGGTGGGCCCGATATCCCCTTCCAC
CCTGGAAGAGATGACAAGGCTGAGCCACCTCAAGAAGGCCGGCTTCCTGA
TGCTAAACAGGGTAATGATCACTTGAGGCAGGTCTTTGGTGCTCAGATGG
GCCTCAGCGACAAGGATATTGTTGCTCTCTCTGGTGGCCACACCCTGGGA
AGGTG
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